RNA id: AMCG00006601


Basic Information

Item Value
RNA id AMCG00006601
length 1584
RNA type mRNA
GC content 0.37
exon number 6
gene id AMCG00006601
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11116560 ~ 11119469 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCAGAATGCCCTTTTGCTGGGGAACGATTCTGAAAGGTTGAGTGAAGTGCATGACGAGAAGGATTGCGAATCATTTGACACTTCCCCCCTGTAAtggatcaaaacaaacaaaatgaagacgACTACGGCTATCAGTTGTTCCCAGAGAGAAATACATCGAAATATAAAAAGGGGTCTATCGCAGAAAGCCTGTTTACCTTCAAGCACAAGTGTCAGGTCATGCTTCAGTTTACACTGGACACAAGTCCCTATGCAAAACTGCTTCTTGGTGCAATGAAACATTCCGGCTCTGTTTATACAGATCGGCATTTCTCCTGTGAGGATTGTGATGGAAAAGTTAGCGGTGGTTTCGATGCCACAACCTCACAAATTGTTTTGTGCCAGAATAATATTCACCAGCAGTCCCATATGAACAGGGTCGTCACCCATGAACTTATTCACGCCTTTGATCACTGCAGGGCCCATGTTGATTGGTTCGATAATTTCAAGCATTTGGCCTGTTCAGAGATCCGGGCAGCCAATCTGAGTGGAGACTGTTCCTTTAGTAATGAAATGGGTAGATTCAACTTCGGCCTTAAACAACACCATCAGGATTGTGTTCGGGATCGAGCCCTTCGCTCCATCTTAGCTGTTCGGAAAGTGAGTCGAGAAGATGCAGAGAAAGCAGTGGACAAAGTCTTTGATAGCTGTTTTAATGACTTTGCGCCCTTTGGAAGAATCCCACATGGCAACAATGATGCAAAATATGCATACAGAGAATTCCAAAATCGAAATCGCTACTATGCAAAtctttaataaaaagtaaataataaaaaggtgtaTTTCAAAGGTGCTATCATACTGATTCGCTCAATAGCACCAGTTTTGTTGCTTCTGAGCTCTGCATGGGTGCAGCCCTAACGGGAACAACATTCATGCTTTTGTATATATGACTAAAACGCCACATGACTTGTGGcaagttataaaataatttggtgaaaataccatatttaaaaaataagtacttTTTATGAACTTgtaaccaaaatgttttaataaaacatgaaaaacacattggTGTCACCTGcaaaaagttgtatttattggttGCTATATAGATTGTTTGTAAGTTTGAGTTAAggtttcatatttatatttttcatcttgTAGTGTTTGATTAAACAGGAATTTCCAGTCCTGTTTATTTGGGATCTTTTAATAGACGTCTTTATTCCTCAACCATCTGTCTTACTGAATGTattcaaaacattgtatttttcctgtTCAGTCTGATTAATTCAAGGGGATACATGTagtgttatttaacaattgCCCATAATTACAACCAGAATAAAAAGAAAGccaaaaaacaatattctgCAATAGCACATCAGTTGTTTTTTATAGACATATAACAATTTGCAAGTTCATTTAGATTTTATaaggctgttttttatttttaggtttatatatttaataatcatatatttCCTTGCTTCAGACAGTAGAGGGAGCTTTCACACCACCTATCTATTTTTGATCGAAAAAGGAAAACTTTTAGTCACAGCACTCATTGTATTTTTGCCACTTATATGCTAAGCAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K18156 ATP23, XRCC6BP1; mitochondrial inner membrane protease ATP23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138673 lncRNA upstream 746629 10369715 ~ 10369931 (+) True G110722
TU138618 lncRNA upstream 1084714 10030426 ~ 10031846 (+) True G110681
TU138486 lncRNA upstream 1659649 9456665 ~ 9456911 (+) True G110590
TU138446 lncRNA upstream 2228068 8887686 ~ 8888492 (+) True G110558
TU138404 lncRNA upstream 2321229 8795060 ~ 8795331 (+) True G110523
TU138835 lncRNA downstream 921 11120390 ~ 11120735 (+) True G110849
TU138877 lncRNA downstream 230415 11349884 ~ 11350117 (+) True G110883
TU138920 lncRNA downstream 552100 11671569 ~ 11672448 (+) True G110916
TU138936 lncRNA downstream 673699 11793168 ~ 11793535 (+) True G110930
TU139023 lncRNA downstream 903341 12022810 ~ 12024549 (+) True G111008
AMCG00006594 mRNA upstream 243003 10856045 ~ 10873557 (+) True AMCG00006594
AMCG00006593 mRNA upstream 287051 10828315 ~ 10829509 (+) True AMCG00006593
AMCG00006595 mRNA upstream 297956 10786260 ~ 10818604 (+) True AMCG00006595
AMCG00006596 mRNA upstream 352710 10761168 ~ 10763850 (+) True AMCG00006596
AMCG00006589 mRNA upstream 498788 10593297 ~ 10617772 (+) True AMCG00006589
AMCG00006606 mRNA downstream 186422 11305891 ~ 11321973 (+) True AMCG00006606
AMCG00006610 mRNA downstream 539418 11658887 ~ 11706824 (+) True AMCG00006610
AMCG00006609 mRNA downstream 615214 11734683 ~ 11735631 (+) True AMCG00006609
AMCG00006608 mRNA downstream 654517 11773986 ~ 11790179 (+) True AMCG00006608
AMCG00006614 mRNA downstream 764468 11883937 ~ 11902046 (+) True AMCG00006614
TU138516 other upstream 1549209 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 2392494 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 2939774 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 3461366 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 4204306 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 1891715 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 9818028 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 9928867 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 10023396 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 12912644 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile