RNA id: AMCG00006603


Basic Information

Item Value
RNA id AMCG00006603
length 4817
RNA type mRNA
GC content 0.37
exon number 11
gene id AMCG00006603
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10994638 ~ 11015369 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATATAAGCAGTGCATGGGATGAACCCTTTGCACTTGTGAACAGTGAATAAATTGAAGACCGGCATCTGCTCAATTATTTGGATGTGCTGTACTGGATAAAGGACAGAACACGATCACTTTTCTCATGTGTCCCTTCACCTGCCTGGGCTAAATGAAGTCACATTCCTTCCTTGTGAACCAAGAGGTGCCAGTAGTTCCAAGTTCACATTTGAAAGTAATTACAAGAGCGCTGGGATCCTAGTCAGTGAAGACTCCTTCCTTCACGAGAACATTGTGTCCAGAGATTGAAACTAAgacctgaaaaacaacaacgcaGGGGAACAGCAGTTGTCTGTAGTTCCAGACACACCGTATCCATCccacgttgttgttgttgacatgGACCGAATGGAACTCAAGAGAGTCAGCACCGAGCCCGACGACGACAGCGGGGACAGCCTTGATGACCGCTACAATGAACCCATTGATTCAGAGAAGGTGACGATAAGCAGTCAATTTTGTGATGAAGACGATACAGAGAGTCAGAAGTTCCTTACTAACGGCAtgctgaagaagaagaagttcGAAGAATATCATGAGGAATATGTAAGGATACCTGAGATCCTTCTGTTAGCAGTAGCCATATTATCATTGTACTCTGTTCATCTTTTATTGCTGACGTCAAAGGAAGGGGGCTCTTTAATATATGAGAAACTCGGCGAAAAGGCATTTGGGTGGCCAGGAAAAATGGCTGCATTTATATCTATAACAATGCAGAATATAGGAGCTATGTCGAGTTACCTCTTCATTGTGAAATATGAACTCCCTGAAGTCATTCGGGCATTTATGGGACTCGAGGAAAATTCTGGGTTACCTTGGTTATACCAGCGGCCTGTCGTTGACCTGTATGGTGTTCTTTCTGGCAGTTATAATGTCGAGGCCGAGTTACTTCACACATTCACCAAAGTGTACAAGTTTGACACCCTGCTTCTAATGGTGCGCTTGGCGGTCCTGACAGCTGTCACTCTCACCGTCCCTATTGTGCTCTTTCCAGTAAGATCATCTGCTGCCACCATGCTTATCTTCATTCTTCCAGCTGCGTTCTACCTTAGACTAGTGAAATCCATTCCTTACCGGTCACCACAGAAAATCGGGGCGACCGTGTTCCTCATCGTTGGGGTTATATTCATGATTGGAAGTATGTCACTCATTGTTATGGACTGGATTCACAACCCACCTGGCTCTGGTGGCCACTAGTGGTGCTCGGGCCGAGGCGTACACACTGAAGACTGGAAGCTCGGGTGTCATTCTCCTGAGAGAACACACCTACTTGAAAGTGCGTGTTCCTGTGAGGAGATGCCATTCCACGCCGACGTTAAAAGCAAGAATCCAAAGACTGAGTATTAGAGTATTACAAGggttgtttaaaaaacaatacctgTACATTTGAATAAGGGAGTGtttctatttatgtttttaagattATGGACTCGTTCATATGAGTTTGCTGTGTAATGTTTTGCTAGTTACTTTGTTGATCAATAATGATCATTGCAAGAGCAGTGATGGTGCAGGTGCTGAATACGGACGCCAAGAAACTCATTCAAAGATATCAAGTGTATCTGACTGTCATTTACTGGAGAAGATTGGAGAAAGTTTGTTGCGCATGTGCCTTTCTCTGCCATCGCCGTGTGTGTACAGCCTTTTTGTGGCCTGGATATTTGCAGGTCATAGCCAACAGTGGCCTGATGAATCTTTGTATTACAACTGAGTAGCTGAGTTACAGGTGCTTATATTGAGCTGTTTTGGATGTCTGTGGCAGTGGCCATCATGTGTTCAAAGGCCATAATGTTCACACACTCGCCATGAGGGGAATTTTCAGCATGGAAGAAATAGCACTTTTAGCTCCCTaatgtgtctatatataaatgtatttatatttatgtatacacacacatacactcttcCCCCACATtagttgtatgtgtgtttttttctgtttagtaCAGATGAGTGGAATTCATTAATTTCACCAAAGTCAGTGAACAAGTATTGACTGAGTATTTAATTCATTCtaaagaaggaaacaaacaaattgtcAATGACCTCCCACATCTATGTTTCAGTACAGGACActgtgagtttgtgtttttaatacttctgtttaaagttttcttttgtgttttattattcattcatgtttatATAATTCCCTAAGGGTTGCTAAGGTCTTGTTTTAAGTAGGCAGACAGTAGTGTCCATGCTTTTGTAAGCTGTTATTCTGTACAATATTGGAATGTGAATGCCAAGAAGTGTCTATAGTCAGGATCAGTAACCTCTCGAGAAATTGAACAGGGGTTGCAGTGTAAAGTGCCAACAATACATATAACACCATTTGTAAGATACAAAATTTATGTAGAATACAATGTACTGTTAAAACGTAACTATTCATGGATGTGTTCACTTTAACAATGTAAACTATTCATCAAAGCTAACATTAACTTTCTGTATGTATGctcaatttacagtttaaaagatacaagaaaacatatattttgttttgtaacatttaagGTATCAGTGCCTAAACTAAGAATCATTTCCTGTCCAATCCAACCAGTTTCCAGACTTAGGGCTTAGACTTTAACCCACCTGCTattagcaaactacaaacctgtacatcatagcggttacatttctgattagaagaaagtggcatcttactaaaaatgaagccgcaactgagtatagttctgtagttttcttttagcgggtgggtcaaattgTAGATTTTATCTGGCCCTTAAACTCTTATGTTTTCTTTAAGACATATTATTGTAAATTTGATACCATACATAGAAAGCATTttagtataattaaataaagagcaatcaaataaaacagcaaaagtaataataataattaatcccCTAATTGAaggtaattttatttaataaaattatcaCTCACAAAAATTGTGACCTAGCAATTCAAATAACTGTTTCTTCTTGCATATTCTGTATTTAACTGTTCTAATATAATCCAGTTTTACTTGTAAATATTTTCTATGTTAAAATGTACCTTAATTTTACCTCATTTTGTATCATGTTTGCGCATAAACAGACTCTGATAATCCCATCTTTATggacagagaaaataattcaaaggcttcaaaaatgttaatacaaaagggaaaacataatttaaaaattagaaaCTGGTACCATAAATATATCAACTAAATTTCTTTAATGATTGTACCATAATATTGATGGTCTACCATTATTGCCTTGTGTAAATCAATGTCAACATACTTGTAGTTTACCTTTAAAATGGAAATCCACCTCTAGTTTAGAGCATGTTCAAACTAAACTGAACACAAGTTTATGTGAAATCTTGGAAGCCAATATTTATAGATCTTTTGTAGATCTCCATCTACGGGAAACAAGTggatatttcaaatgaaatagcttaatattttgtgcatgttttaGATTACATACATGGTCTTTTTTGACGATtgtatatgtactgtaaataaTCTGTTGTATGgtacacattttgtatgaatTTGTGGAGGTTATAAGGGATTGTGCCACAAACCAACAGTTTGTTGTTCATCggaattgtttctttttttttttttgttcctttttaaagcTCTTAGttactttaatttcatattagcagcaaaaacattaaaaatacaaatttcagcTGTTACACACAGTATGAGGTACTTGTACTGAATATTTCATTTGTCAATTGGACTAATGTTGGTAGTCTTGTTTAACAGCAGTTTTTTAGTTCTTGTTATGCATCCAGATTGCCTACTAAGTCTACTATGGACACATCAGATGTTTATATACTAGTAACCTATGACCAGGCATAAACTacacaaaatacttttcagaTACTACATAGCCtgtgtggaaaaatatattgacATCCTGCCCATGTAGAACTTTTGCAAATCGTATCACAGCATGGAAGACAAAGATCATTCATGTTCTTTGTGTTTCCATGTAAACCTCGCATCATCAGAAAAACATTAATAGAATTATAATTTTAACTGAAGATCAAAATAACTACAATTCCCACAATACTGTGAATAGaatgtttctgttttactgCTTTTTTGGGACAGTAAACGGAAACTATTTTCTCAAAGGTAATAGGTTTTCCCTACAACAATGGGAAAAACACAGaggcaatataaatatttatgtgaCATTGTGTATTTGGTTTATCTGTTTCAAAACCAACATATGCCTTAAGCCTCCAGTTTTAGGTCGGTACCATGCAGTGAACAGTAAAAGGGCAGGGTCTCGACCGGGGCGAATTGTTGACTGTGGGGCACTACAGGAGGGCACTTTGTGAGTGGCAGGGCAAAGGGGCAGGAGCCGTCGCCCACCCCATGCACACGCCTGATGCAGGTTCTGTATCGATGGCACTGTAGACAGTGAAGACTTGTAATGCTGTATTTCAATATCAACGTTGTGcctttttcaaacaaaaatgttgttttattctctACAGTTCATGActatgttaaaatgcaatattgctTTGTCTTAGTTTGTCGTTCTGtcagacaaaatacatttcttcaaaGGTTCAGAATGAACAAGCATGTTATAGTCTGATTGCTGCTGTTATAAAAGGTCAGAGTGAATGTTAAGTTCCAGTTTTATTCTCCTTCCCTGTGGTACAACTAAAACTAATTTGTATATATGCTGGAacaaagaaaactttttttgtataaGAGAAACAATTTCAATACTATGTTACatgcacaataaaaaataaaaaatgtgtttctgttttatattattaa

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138722 lncRNA downstream 390905 10603095 ~ 10603733 (-) True G110757
TU138687 lncRNA downstream 524578 10421561 ~ 10470060 (-) True G110733
TU138671 lncRNA downstream 689391 10304931 ~ 10305247 (-) True G110720
TU138511 lncRNA downstream 1434534 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 1517132 9476482 ~ 9477506 (-) True G110594
TU138921 lncRNA upstream 656200 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 773571 11788940 ~ 11789234 (-) True G110939
TU138946 lncRNA upstream 774683 11790052 ~ 11793501 (-) True G110940
TU138948 lncRNA upstream 779167 11794536 ~ 11796342 (-) True G110942
TU138964 lncRNA upstream 884594 11899963 ~ 11902168 (-) True G110957
AMCG00006600 mRNA downstream 49829 10935397 ~ 10944809 (-) True AMCG00006600
AMCG00006599 mRNA downstream 76998 10907697 ~ 10917640 (-) True AMCG00006599
AMCG00006598 mRNA downstream 102516 10877715 ~ 10892122 (-) True AMCG00006598
AMCG00006597 mRNA downstream 178476 10762179 ~ 10816162 (-) True AMCG00006597
AMCG00006592 mRNA downstream 263008 10704073 ~ 10731630 (-) True AMCG00006592
AMCG00006605 mRNA upstream 36683 11052052 ~ 11052897 (-) True AMCG00006605
AMCG00006604 mRNA upstream 86716 11102085 ~ 11117866 (-) True AMCG00006604
AMCG00006602 mRNA upstream 198478 11213847 ~ 11231189 (-) True AMCG00006602
AMCG00006607 mRNA upstream 534945 11550314 ~ 11551561 (-) True AMCG00006607
AMCG00006612 mRNA upstream 597226 11612595 ~ 11619824 (-) True AMCG00006612
TU138641 other downstream 887353 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 1442558 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 1995374 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 2200576 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 2270286 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 1002513 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 1121813 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 1860923 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 1860923 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 2440063 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile