RNA id: AMCG00006604


Basic Information

Item Value
RNA id AMCG00006604
length 3893
RNA type mRNA
GC content 0.40
exon number 15
gene id AMCG00006604
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11102085 ~ 11117866 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCCCTGCAGTGATCAAAGGCGTGAATAAGTTCATGGGTGACGACCCTGTTCATATGGGACTGCTGCAAAGTTTACCGCCTGTTCGTAATAAGGactacaaaaagaaaaagagagagaagagcaaaGTGGCCGCCAAGAATgcaaagaatgaaaagaagaaagcatCTCGAATTAAATCTTATGATTACCAGGCCTGGGACAAATTTGATGTGAATAAAGTATTAGAAACCCTGGACAAAGAGGACAGTCCAACTGAATCGCATGAATCCGATTCTGATGAGGATGGGCTGCATATCGACAGAGACGCAGCACTTTCTGAGAAGGAAAGAGGCAATGATTTCTTCAAAGAGGGGAAATACGATGAGGCAATAGGCTGTTATACCAGAGGTATGGATGCTGATCCTTACAATCCAGTTTTGCCCACAAATCGAGCAACTGCTTTCTTCAGGCAGAAAAAGTATGCTGTGGCTGAGTCTGATTGTAATCTAGCCATTGCACTGGACAGAAACTACATAAAAGCTTATGCGAGAAGAGGAGCAGCTCGGTTTGCTCTTAAGAAATATGAGAGCGCACAAGAAGTGGCTCAACCAGAAGAAAAGGGAACCTCCAAAATGGAAACGCCACCAGTTGACGAGAGTGAACAGAGGCGGACTGAAGAGCAGCAGGCAAAGCTGCAGGCTGTGGTGCAAAAAGATCTGGGCAATGGATATTTCAAAGAAGGAAAGTACGAGGCGGCTGTGGAGTGCTATACCAGGGGAATGGCAGCAGATGGCACTAATGCACTATTGCCAGCAAACCGGGCAATGGCTTATTTGAAGCTGCAGAAGTACGAAGAGGCCGAGGGCGACTGTAGCAGTGCTATAGCTCTGGATGCTACTTACACAAAGGCCTTCGCCAGGAGGGGGAGTGCAAGAGCAGCGCTGGGGAAACTGAAGGAAGCTAAAGAAGattttGAAGCTGTTTTGAAGCTGGAACCAGGAAATAAACAAGCAATGAATGAACTTGAGAAAATCAAGAATGAGATGCTGGCGAAAGGTTTGTTATCAGAAGAGCAGTTTGCAGAACAGCACACTCACAGCACCAGTCAAAGGAGAATAGTACAGCCAATCAATAAACCACCTCATCTGCGTTCAACAAAGCCATTGAGGAGGATTGTTATTGAAGAAGTGGGCAGTGAGATTCCAGTTCTGCATGGGTTAGAAATGGCAGCTACCTCGGCACCATGTAAAGTGGCATCCTCATCCATAACAGAAATCGGTACAAGCCAGGAAGGATCTGTGCCGCTAGAATGTGCCCCTTGTGCCAAGATCCTAAAAATAGAGGAGATCTCAAACACTCCAGCACATCCCCCTGGCAAgATTCCCAACACAGACCACTCGAACAAGTTAACTGAAAAAAGTATTGATGTGAGAAATGCTACAAGTCAGGAAGATGCATCTTCCTCATCTGAATCTGTATCTATTCCACCCATCCCTGCAAACGCCTTTCAACTGGAAGCAGATGTGAGGAAGCTAAAGGATTACCCAGACATGATCTACAAGTACTTAAAGcaAATAGAACCATGCATGTACCCCAAAATATTTCAGAAGTCTTTAGAGCCTGATCTTCTCAACCAGATTCTGAAGGTGTTTCGGGACTTTTATATACAGCATGAAGATCCATCTCTGATATTAGAGATTCTGAGGAACCTGGCAGAAGTGAAGAGGTTTGACATGGCAGTCATGTTTATGTCTGCAGGAGAAAAGAAAGATGTACAAGAATTATTCTCCTGCATTCATCAAGCAGGCTTAGAAGATGAAACAGTCAGATCTCTTCGGAAGAAATATGGCCTCTGATTTTAGCTTATGATCCCATAAATGGAGGACTTTGTAAAATGCTTTTGGATTGGAACTGAGCAAGTGACCTGTGCAGAGCAGAGCTCCAGcaattaaacatgcatttggCATCTAGcgatttcagtgtatttatcaaaacaaactaaataaaacggAACCTATTTTGTGTCAGTATTTAGTATATAAATAGAAACCCATTTTGTCTGTGTTCCCCATCTGTTTGTTCAAGTAATACCTGCTCTGTGCTGATACTTTGGATCGGATATTAAACATCTCGTCTTACTCAGATACGATCATAACAAATCTTTGTAAACCTTATCTCTTAAAGCACGGTTTTGAATCCTGCCATGGCAACAGCTTGAATGCCCAATTTCTGGTGAAGCTGCACCACGTGTACCAATCCCTAAATCCCATGTACTGGGCATGCTGCAGTTAACTGTTGATATGCAGCGTCTCAGCACATTGTGGTGTCTGTAACGGATATGGCTGACCAGATCGAACCAATTTCCAGCAGCACCAGTTATAGCTCTGTTACACTATAATGTCCAAAATGCATGGAACTCGGTCACTGCAAATCAGGAATGGCAAATCTGGTGTCACACGTAACATGCTAATAATCCAAACAGCTATTAATAGCCCATGTACtgaaatctgtttgttttttaaatctaatcaTTAAGCCTGGATTTACATTTTCCCCCTTTATGTTTCACTCTGTTGGTTTGAGTGCagaaaaggcaaaataatttcaattataaatgtaGTTCATACAAATCTAATCCTTTAcatatgttttatgaaaatacactatttaaaatgtcagttcaATATACTGGTTTCTTTTTTAGAAGAagaataaattaactttaataattTGGGGCCCATTGTACATCTCACACAAATGCAACTAGTTTAATCTTTGAAGACTGCCAATTACACAGTGCCCCTAATACATATCTCTGCAGCATGTGTGCAAGAAGAGCTTTACAATCAGATTCAAAACTTAAACCACAATACTACtgctgtgcctctctctctctctggggaaTTGCAACAGCCATGTACAGCCACCTGTTCAGCTAGTGTAGCTGTAATCGGATATTCCCACAGAATAATTCCAccagctctctctctatctcagtcgtccatttatatttttctgccCTTTCTCTTTGATTCCAAAGTTggcttcaaaaacaaatttaaactatttttattttatattgaccCGAGTACTGGCTGAACTCGATGATTGTTCCTTTAGTCTCTTTTATCAGCAAGTGAATAACTAATGAACACTTTGGACTATTTATCTCTAGTTGTATATCATTTCTGAATTTGTGTGACTGTTTTCTCACAACAGTGTTTTTATCTGTTTGTCTTTGCTATTTAATACTTGGTGTAATGCCATACATTGTTGCTGGGTTTTTGTCATTTCTGGTGTTTGCACATTTCATCGTATTACTGAGAATGTAAGGCCATCTATAGTGTAGGGAGTTGCATCTGAAATCTTCCTCctagcaataataaaaacaaatctgcattggCCAACGTCACTCTTGTCTTTTTGTTCGTTTTCCATTAGTAGTGCCCAACGTGTGGGGACACTTTATCTACGAGTCACTTGATCGCTTTCTTATTTTAGCTACTTTGgatttgtgaaaaatatttagATCCAACAAAGATGGGCTTGAACTGGAGCATAGAACTTGagtattcagtattcagtaaatgcattttgttcttaattttaaCAATGTACAGTTTTTACATCGTAATGGCAAATAATTGTATTGGTTTACAGTTTTGTATTAGTTGTTTTACTGTGTAAACTGCACCAAGAAACAAATGGTTAGGCAAGAACAATGCTTATTCATCAGGTATTTATTCAGAAATGATTCCACAGATACTGTGTTCCAACACGGATCAATTCCATCTGTTCAGGCCATATTATATTCTGTTTGTTCAAGAATGTTTGCatgtaaaaattattaaaattgctCTTAATCCAGCAATTTTAGCCTGATTTTGTGCCtatagattttaataataac

Function

GO: NA

KEGG:

id description
K23002 RPAP3; RNA polymerase II-associated protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138722 lncRNA downstream 498352 10603095 ~ 10603733 (-) True G110757
TU138687 lncRNA downstream 632025 10421561 ~ 10470060 (-) True G110733
TU138671 lncRNA downstream 796838 10304931 ~ 10305247 (-) True G110720
TU138511 lncRNA downstream 1541981 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 1624579 9476482 ~ 9477506 (-) True G110594
TU138921 lncRNA upstream 553703 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 671074 11788940 ~ 11789234 (-) True G110939
TU138946 lncRNA upstream 672186 11790052 ~ 11793501 (-) True G110940
TU138948 lncRNA upstream 676670 11794536 ~ 11796342 (-) True G110942
TU138964 lncRNA upstream 782097 11899963 ~ 11902168 (-) True G110957
AMCG00006605 mRNA downstream 49188 11052052 ~ 11052897 (-) True AMCG00006605
AMCG00006603 mRNA downstream 86716 10994638 ~ 11015369 (-) True AMCG00006603
AMCG00006600 mRNA downstream 157276 10935397 ~ 10944809 (-) True AMCG00006600
AMCG00006599 mRNA downstream 184445 10907697 ~ 10917640 (-) True AMCG00006599
AMCG00006598 mRNA downstream 209963 10877715 ~ 10892122 (-) True AMCG00006598
AMCG00006602 mRNA upstream 95981 11213847 ~ 11231189 (-) True AMCG00006602
AMCG00006607 mRNA upstream 432448 11550314 ~ 11551561 (-) True AMCG00006607
AMCG00006612 mRNA upstream 494729 11612595 ~ 11619824 (-) True AMCG00006612
AMCG00006613 mRNA upstream 620353 11738219 ~ 11755480 (-) True AMCG00006613
AMCG00006611 mRNA upstream 708035 11825901 ~ 11839726 (-) True AMCG00006611
TU138641 other downstream 994800 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 1550005 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 2102821 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 2308023 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 2377733 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 900016 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 1019316 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 1758426 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 1758426 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 2337566 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile