RNA id: AMCG00006605


Basic Information

Item Value
RNA id AMCG00006605
length 846
RNA type mRNA
GC content 0.46
exon number 1
gene id AMCG00006605
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11052052 ~ 11052897 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTAACGTACTGGTCCAAGAGGAAGTTCCGTCCTGTTACTGATTTCAAAGATGATTATAAATGTTTCCTTCCACCTCAGCTGGATGTGCCCCTGAATCTGTTGTCTCAGTCAGACGACTTCATGAACTGCTCCAACAGCACTGTTAATGGCTCTTTCTATTCTTCAGGGGTGATTTATGAGGTTCGTATTGGACACCGTCTTGTGGTACACTGTGACAGCAAAATACCAGATGCAAACTCAAATGTCTTTTGGTTAAATCCCAGCCAGGAGCTGCTGAAGTCTGGAGACCGCATTGAAAATCTCAAAGTGTTTCCAAACGGAAGCCTGGAGCTCAACGATGCTCAAACAGGGAACTCTGGGATTTACACTTGCATAGTAATTAACCACAGGAGAAATCTGAACGAAACCATTGAAGTCACAGTCAAGGTTAGCAACTCCACAAGTGACAAGACCCGGCCTCACGAAACCTTTAACACAGCCTTCACGACGCTCGCCGCCTGTGTCACCAGTATTGTCCTGGTACTGATCTACCTGTACCTGACCCCTTGTCATTGCTGCTGTAAGACAAGGAAAAACCCCAGAAAACCAAATCTAGGTAGCGCCCGATCCTCCATTCTGAGTGGCACTCCCAGCAACGAAGCCCAGCCAGATAGAAAAGCGAGCACCGGTAAAAGAGTCGTGTTCTTGGAACCAGGAACCGAACTTCAGGAAAGTCAGAACGGCAAAACTAAACTGCTCTCATCAGAGCAGGTCATGACGGAAAGCATCTTAAAGAACAGCAAAATGAAGCTGGATTCAGACTCAGTTACCTCATTGTTTTCAGACACACCTTTTATCGCTTAG

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138722 lncRNA downstream 448319 10603095 ~ 10603733 (-) True G110757
TU138687 lncRNA downstream 581992 10421561 ~ 10470060 (-) True G110733
TU138671 lncRNA downstream 746805 10304931 ~ 10305247 (-) True G110720
TU138511 lncRNA downstream 1491948 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 1574546 9476482 ~ 9477506 (-) True G110594
TU138921 lncRNA upstream 618672 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 736043 11788940 ~ 11789234 (-) True G110939
TU138946 lncRNA upstream 737155 11790052 ~ 11793501 (-) True G110940
TU138948 lncRNA upstream 741639 11794536 ~ 11796342 (-) True G110942
TU138964 lncRNA upstream 847066 11899963 ~ 11902168 (-) True G110957
AMCG00006603 mRNA downstream 36683 10994638 ~ 11015369 (-) True AMCG00006603
AMCG00006600 mRNA downstream 107243 10935397 ~ 10944809 (-) True AMCG00006600
AMCG00006599 mRNA downstream 134412 10907697 ~ 10917640 (-) True AMCG00006599
AMCG00006598 mRNA downstream 159930 10877715 ~ 10892122 (-) True AMCG00006598
AMCG00006597 mRNA downstream 235890 10762179 ~ 10816162 (-) True AMCG00006597
AMCG00006604 mRNA upstream 49188 11102085 ~ 11117866 (-) True AMCG00006604
AMCG00006602 mRNA upstream 160950 11213847 ~ 11231189 (-) True AMCG00006602
AMCG00006607 mRNA upstream 497417 11550314 ~ 11551561 (-) True AMCG00006607
AMCG00006612 mRNA upstream 559698 11612595 ~ 11619824 (-) True AMCG00006612
AMCG00006613 mRNA upstream 685322 11738219 ~ 11755480 (-) True AMCG00006613
TU138641 other downstream 944767 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 1499972 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 2052788 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 2257990 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 2327700 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 964985 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 1084285 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 1823395 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 1823395 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 2402535 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile