RNA id: AMCG00006610


Basic Information

Item Value
RNA id AMCG00006610
length 2922
RNA type mRNA
GC content 0.47
exon number 22
gene id AMCG00006610
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11658887 ~ 11706824 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggctgcctCAGATCTAACCAGGATACTTTGCTCCAATAATGGGGCGATGGACTGCGGGGAATTACTGGCCAACATCGCCTCAGATGTAGATACAATGAAGAGTTtggaaaagatgctggaggaccGGGGAAAGTTTGCTGTTATTCGTGTGAAAGGGAAAAGGAGAGTCATTGCCAGGACTAAACTGAGACTGTGCCGAGCCAGAGGCTGCGAGGACTGCAGCCACTTACACCTCTGCAAGTTCTTCCTTTATGGGGAGTGTAAATTCAGCAGGGGCAGAAGAAACTGCCGGTTCAGCCATGACATGAACTCTGTGCACAATGCAAAGGTCCTGCGAGAGAATGACCTCCAGGACCTGGACAGGAGAGAGCTCTGCCAGCTGCTGCTCCAGAATGAACAGACCCTCCTGCCTCcgGTCTGTTTTTCATATAATAAAGGCAATGGACAATACGGTAATTGTGATGGCCAGGAAAGCTGCACGAGGCTTCACATCTGTGAGAAGTATATCCGAGGAACTTGTAATGCTGGGGTAAACTGTGACAAATCACATGACTTCTGCGACGGTCACCCACTGAAAACCCTGGAAGAGAGAGGGCTGCCCAGACATCTGATCAACTCCCTTTTACCAGTGTACCAGAATATCCTGGACATGAAGAATGAGAACTACAACAGGAAGGAGCCACAGAAAGaTAAAACAgagatctgtattttttatgtcaAGAAAAACTGCATGCATGGAGGATTCAACCCTGTTAATTTTGACATGATGACCAGGGGATCTGCTAAACCTACCTTTATCCTCACTACAGAATGGGCCTGGTACTGGGAGGACGAGAATGGAACCTGGATTCAATATGCAGCATCAGCTGGACTTCACTCTGCCTCATCCATCACAAGTGAAGATCTCGAGAAACTATATCTGGAAGACGACAAAGCAGTCATTGAGTTCACAGCAGGCCGACAGGCATATAAACTCAGCTTTCAAGATATGattcagacaaacaaacaatatggaACCAAAAGACTAGTTCGAAGACGTCCAGTGTTTGTTTCCACAGCTGATGCTCAGACCATCAGAACAAGCCAAAAAgaacagatggaaaaaaataacagggGGAAGGGTGTAAACGAGAAGCTCCTGTTCCATGGCACTGATGCTGAATATGTTGATGCTATTtgcaatcaaaactttgactggAGACTTTGTGGAAAGCATGCAACAGCCTATGGAAAAGGAAGTTACTTTGCAAGGGATGCAAAGTACTCGCACGGCTACACTGGGTCTTCAACAACCAAGTTCATGTTTGTTTCCCGGGTTTTGGTTGGCCAGTACATAACGGGGAACTCCAGTTACCTCCGACCCCCCTCGAAAGATGGTGGAGATTGCAATCAAAGTGAACTGTGTGCAGTGGAGAAAATGGCTGCTGACTGTATCACAAGCTGTGCTACGAAGATCCTCTGCTCACATGGGGGGGCACTGGAATACAGCTACCTCAGAGGCTACATTCAACAGTTGCAAATTCCAGATTCGGTGTTCTGTAAAATCCTGAGGAGCAGTGGGAACTTTGTCATAGTTTCATGTGGAGATAACGTGCCGGGCTACGGTCTCAGCCCAGACAGTAAAAATGACTCCTCCCTTCTGCCCAAGATATGCATGCACTACAATAAGGGAACTGGGGAATTTGGAAATTGCTCCTTCAAGGAAAGCTGCAAGAAGCTCCATTTATGTCTGCActttctaaatggctgttgcAAGTTCGGTCCTACATGCAAGAGATCCCACTCCATTGATAGAAAAACCTTCAGAATGTTGTCGGAGAAAGGCCTAGgaaaacaagaccCTGAGAAACAACCAGATCTAAATAAACAGTTGGACAGCACTGAAATCTGTCTCTTTAACATCCGCAATCAGTGCACTTTTAAAGACGCATGCATTAATATCCACTATTCCCTGCCCTACAAATGGGAGGTCTTCAATGGCTTATTCTGGGAAGAATTACCTCATATGGAGCATATTGAGAAGGCCTTCTGTAATCCAGACAACACAACAAGTGACGGGACTCCAGCTGTAGACTTTGTTAACATGACTCGGGGGTCAGCTAAGGTGAGGCGTCTGTCCACGGTGTCCTCTGTGACCAAACCCGCTCACTTCATCCTGACCACGGTGTGGGCCTGGTACTGGAGAGATGAGCGCAGAGTGTGGAAGGAATATGGAAAGCAATTGGATACAAATCAGACTTCATCAGTCACATCAGAAACCATTGAGAAAGCTTTCTTAGCAGATGGAAACAGTATCCTGACTTTCACCGCTGGGAAGCATGAGTACACTCTTACTTTCAAAGTGAATCCTCTGGGACTAAATCCTTTCCAAGTCATTGGGATCCAGCTGCTGTGCCTGAATGTGGATACGagGCAGAAGCAGCGAATGAAGCTGAGAAACGGAGGGATGGATGTGGAAGAGCGATTCTTGTTCCATGGTACTACCCAGAGTACCCTGCAAGCTATCTGTGAGCATAATTTCGActggagaatctgtggaaaaaaTGGCACTTTGTACGGCAAAGGAAGCTACTTTGCAAGAGACGCCAAGTACTCACACCACTACACCGGCTCCACCCCTGTCCGGGCTATGTTTGTTAGCAGGGTCCTTGTTGGCATGTTTGTGAGAGGAGAGACTGACTATCTGCTCCCGCCATACAAGCCTGGCAGTACCACCAGCATGTATGACAGTTGTGTTAATGACCCAGGCAACCCTTCGATTTTCGTGGTGTTTGAAAAGGACCAGGTGTACCCAGAATACCTTATATACTACACAGAGGTGACCACACAGCAACAAACGGTGCCAGCTCCTGTTGCTTCAtCTCTTCCGTGGCTGTCTATGCCTTGCGAAACAGCGGAAGACAATGCTGTCAgAACGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138877 lncRNA upstream 308770 11349884 ~ 11350117 (+) True G110883
TU138835 lncRNA upstream 538152 11120390 ~ 11120735 (+) True G110849
TU138673 lncRNA upstream 1288956 10369715 ~ 10369931 (+) True G110722
TU138618 lncRNA upstream 1627041 10030426 ~ 10031846 (+) True G110681
TU138486 lncRNA upstream 2201976 9456665 ~ 9456911 (+) True G110590
TU138936 lncRNA downstream 86344 11793168 ~ 11793535 (+) True G110930
TU139023 lncRNA downstream 315986 12022810 ~ 12024549 (+) True G111008
TU139091 lncRNA downstream 479784 12186608 ~ 12187768 (+) False AMCG00006624
TU139099 lncRNA downstream 643933 12350757 ~ 12353363 (+) True G111063
TU139186 lncRNA downstream 913885 12620709 ~ 12629968 (+) True AMCG00006636
AMCG00006606 mRNA upstream 336914 11305891 ~ 11321973 (+) True AMCG00006606
AMCG00006601 mRNA upstream 539418 11116560 ~ 11119469 (+) True AMCG00006601
AMCG00006594 mRNA upstream 785330 10856045 ~ 10873557 (+) True AMCG00006594
AMCG00006593 mRNA upstream 829378 10828315 ~ 10829509 (+) True AMCG00006593
AMCG00006595 mRNA upstream 840283 10786260 ~ 10818604 (+) True AMCG00006595
AMCG00006609 mRNA downstream 27859 11734683 ~ 11735631 (+) True AMCG00006609
AMCG00006608 mRNA downstream 67162 11773986 ~ 11790179 (+) True AMCG00006608
AMCG00006614 mRNA downstream 177113 11883937 ~ 11902046 (+) True AMCG00006614
AMCG00006617 mRNA downstream 280636 11987460 ~ 12000919 (+) True AMCG00006617
AMCG00006620 mRNA downstream 306262 12013086 ~ 12014321 (+) True AMCG00006620
TU138516 other upstream 2091536 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 2934821 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 3482101 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 4003693 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 4746633 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 1304360 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 9230673 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 9341512 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 9436041 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 12325289 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile