RNA id: AMCG00006614


Basic Information

Item Value
RNA id AMCG00006614
length 5622
RNA type mRNA
GC content 0.48
exon number 28
gene id AMCG00006614
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 11883937 ~ 11902046 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAAGGTCACCGGCGAGTCCAAGACTTACTTCCTGGAATTTAAGAACCTCAATGACACTGCACCTCCCACTGTGGTCTTTAATGCCACCTACCATGGCCTCTGTTACATCATAACCCTCATGCAGTTGAACACCAAGATGGAGTCAAAAGCTGTCAAGTCAGTCACCGTTCTAACCAAGCCTCTTCCTGTGAACAGTGTGTCTATTCATGACTTTCAGCCTTCCCCCGAGACTGGCGTGATCTTTGAGTTCAAGTGTGCTGAGAAGCACAATGTTTTTACAAGAGTAAACATAAGTTACCTTGAGGGGAGAGAGCAACGGTCCATGTTATATAAAGACTTCTTCAGGGGAAAGACTGTTTTCAAGCACTGGTTGCCAGGAACTTGCTACAGTAACATAACTTTCCAACTGGTATCTGAAGCCACTGTCAACAAGAGCATCTTTGTCCAATACAGTGTTGTGGGACATGAAGCAAAACGGCACCGGACAGTGCCCAACCCTCCCAACAATGTTTCTGTGCAGATAGTGCACATCAACTGGGGACGCCTGGCTGGAGTGCTGGCAAGTAAGGGCAGGGAGGAAATCAGACTTTTGGAAGAGcaagaggcagaggaggagcaACAGCAGGGgcaagaggaagaggaagtgcAACAGGAGGGgcaagaggaagaggaggagcaacaggaggaggaggaggagaatgcGAGAACCTACAAGAACATCACCACTCTGCAGCCCTTTGATCTAACCCAGAACCCCAACGAGTCCTTCAGCTGGGTGGACTACAGCAACGACACAGACTCAGAAACCACCACCCAGCCCTACTGGCCCTCTGTGGGGACCACTATCTCCAGCGATGGGGAGGAGTTTGTCAACCAGGTGGTGCAGGAGTATGAGGATGAGAACGAGATGGGCTCTGCCATGGACATCGCCTCACCTGCTTCACACATGGCCAGTTTCTCTCCACTACTCCTGGAGCTGCGCTGGCTGCCCCCACACCCTCCCACGGCTTTCGACGGCTTCAATATCTACGTCTACAGAGATGGGAATTCCTCCGAGGTGGCCACAGTAGATGAAAACACTCATGAGTTCTTTGCCAAGTTGACCGAACCCGGGACATACACAGTGTCGATCAGGACATTCAGCTCGTCTGGAGAGTGCAAACCCCGAGAGAGTACAAGTGACACCAGTTTCACATTTTACCTCAGTCCCAGTGGCAGGTGGTTTGAGGAGCTGAAGGAGAAACCTCAGGATGTCAGCGTACGGATGCTGAGCTCCAGCATGGCAGCTGTGTCCTGGGCCGCCTCCCCGGAGAGTCACAACAGTACCCTGGTGTCTGTGGTCTCACTCACCTGTAACAAACCCAGCCTCAACCAGCGGATAGAGAGCAGCTACTGCAGCCAGgAAAATTCCTCCAGTGACATCATAACAAACTTAACTCCTGGTGCTCAATATAAAGTGGTGGTCTATCACGTGAACGGACCCCTGACTAGTCCACCATCGGATCCGGTCATATTTGGAATAGAGCCCACAGGGGTGCGGGACGTGGTACTCTACCCCCTGAACCCCACGACGGTGATCCTGAGGTGGCGGCGGCCTTATCACGTGGCGTTCCGCAAGTACGTTGTGGAGCTGTATTTCTTCAACCCGGCCAGGCTGACCTCAGAGTGGAGCACCTACTACGAGATTGCGGCGACGGTCTCCGTCTCCGCCTCTGTGAAAGTGACTGATCTACTGCCTGCTTGGTACTACAACTTCCGTGTCACCATGCTAACCTGGGGAGAGCCAGAACTCAGCTGCTGTGACAGTTCCACTGTCAGCTTCATCACAGCCCCAGAAGCTCCGCACATCTCCTCGGTTGATTACTCCAACAGTCTGCTGTACGTCAGGTGGACGTATGGGGACGTGTTCACAGACCTGTCTCACTCCAGAATGCTGCACTGGCTGGTTGTTGCGGAAGGCAAGAAGGGTGTCAGAAAGAGCATATCCTCTGATGTGACCCGCACTGTGATGAAAGCGGTGCTCAGTTTACCCCCTGGAGACATCTACAACCTGACTGTCACGGCCTGCACCGAGCGCAGCAAAAACACATCCGCACCGCACATCATCAAACTGGAGCCTGCGCCTCCAAAGTCTTTATACGCTGTGAATGCAACATACACGTCTGTCACTCTCCTCTGGGTGGAAGAGGGGGTTGTGGATTTCTACCAAATCATCTGCAAGATAGTCGGTTCGAACAGAGAGTTAAAGGAGAGGGAACCACAGACGGTGAACTCTCACGTGGTGACCATCTCCAGCCTCCTGCCCTCCACCGTTTACAACTGCAGCGTGACCAGCTACAGCCACAACACTCCCAGCGAGCCCACCTTCATCGTCATCTCCACCCTGGtgaCCGAAATGAATCCAAACGTGGTGGTCATCTCCGTCCTGGCCATTCTGAGCATCCTTCTCATCAGCCttctcctcctcatcctcattGTGCTGAGGAAGAAGCACCTTCAGATGGCCAGGGAATGTGGCGCTGGAACATTTGTCAACTTTGCCTCTTTTGAGAGGGATGCAAAGCTGCCATATAACTGGCGAAGGAGCATTTTTGCCTTCCTTACCCTTCTGCCATCCTGCCTTTGGACTGACTATCTTTTGGCTTTTTATATTAATCCCTGgaGCAAGACTGCcttgaagaaaaagaaactaacAAACCCTGTCCAGTTGGATGATTTTGATGCCTACATCAAAGATATGAGCAAAGACTCTGCTTACAAATTCTCCCTGCAGTTTGAGGAACTCAAAAGTGTGGGTCTCGACATCCCCCACGAGGCCGCTGATCTGCCAGTGAACAGAGTGAAAAACCGCTACACAAATATCCTGCCTTATGACTTTAGCCGAGTGAAGCTGATTTCAATGCACAATGATGAAGGATCCGACTACATCAATGCAAACTACATACCCGGATACAGGTCCCCACGCGAATATATTGCAACGCAGGGGCCCTTACCCGAGACGAGGAACGACTTCTGGAAGATGGTCCTGCAGCAGAAATCTCACGTCATCGTCATGCTGACACAGTGCAATGAGCGGCGCAGGGTGAAGTGTGACCACTACTGGCCGTTTACAGAAGACCCGGTCGCTTATGGAGAAATCACAGTAGAAATGACTTCTGAAAAAGAGGCAGCCGAATGGACCGTGAGGAATTTTAGACTGAACTACGCTGATGAAACGCAGGACGTCTTGCACTTTAATTACACGTCCTGGCCTGACCACGGGGTTCCCACTGTGAATGCAGCCGAAGGCATCCTGCAGTTTGTACAGATTGTCCGACAGCAGGCTGTCAAGAGTAAAGGACCCACTATAGTGCACTGCAGTGCTGGTGTGGGCCGGACAGGGACCTTCATCGCTCTAGATCGCCTGATCCAGCACATACAGGAGCACGAGTTCGCAGACATCCTGGGTCTGGTGTCGGAGATGAGGTCTCACAGACTCTCCATGGTGCAGACGGAGGAGCAGTATATTTTCATCCATCAGTGTGTGCAGCTGATgtggaaaaagaagaaacagcatTCCACCTCCACCGATGTCATATACGAGAATGTCAGCAAATCCTAGTCTTACACTACTGAAATGGTTCACATGCCTTTCCTTGCTTCAGGCTTTAGTGCTTGCTTTCTGCCAAGAGAGTTTTTTTTCCAACTACCATttataccaaaaaaacaaaacaacaacagaaaaagcagaaaacgTTTTGTTTGAAACGGTGAAAGCAGTGGAAGGAGCCTTGCCTTAAAGAACCCGCGTTTGACTATGAAGCGCTCCTCCCATGCGGACTTTCTCACGGCTGGACCAAATAGTTGCCCACCCAGAACAGGATGAAACAGTGAGGCGGACACGGAAACGGCAACCTGAGAACTGCGGACAGCAACACCTGGCATTCCCGAAATAGTGATGCTGCagacttttttccttttgaaaaagaAGTGCAATAAGTATCTCTTTACAGACCCGAGTCAAACAAGAGTGATTACTGAACACTGAGAGGAGGGATGTCCGATTACTGAGCAAGTGTAGGAATGTCGTTAGTTAGCGATGTAGTCTCCGGATTAGTTGAAACAAAAGTAGTTTCTAAATTGTAATAGGGGGAGTCATAGTTTATCCAATAAGCTGAACTTTTAGCACATTAACCCAATTACACTGACTAGTTTTAGTACTCACAAATATTGCAGAAACAGCAAGTTTTCATCATGTCGCGATGGGCAGCATTAGTGTGTGACCATGAAAAGTTAAACGGAAAATCACTGCCACCAGATGTGTAGAGGGACCTGTATTTATAACCTGAATGTTTAAACAGTGGACCATTCCATTACAACACCACTAGTTTGAAAATATCAATTATATAGATAGTCTGGGATATAATAGGTGCACGGAGTCTCGAGGAAAAAGTAATCTGTTATGTCTGTTGCCAAATTGCCTTGTCAGTTGCCTAGCCTTACCACTGCACTGGTGTGCCAAATACAGtttgacaagaaaataaaatgagcatagttctgttaaaaagaaaaaaaaaaaaaacacaatttaagaaTGTTGCAAGTAGAAACTCTTTGATTTGTAGTGTGTATTTGATGCATGTTGCATTATGATTGAGCAAATCAAACTGGAAAGGCGTCTGGATAGGCACTGCTAAGCAACTGTTTAAATCAGCGCTACCTTCTCCCAAGCTGCATTGGGATTccggtgtgaatactttcattCCACTTTGGACCTGTTTTCTCTGTGCGTTTTGGATTTCATGGGGTGTGTTTTGTGTGCCGTCCATGTGAATCTAGAGACAGCAGTAGACATCATTGTGATTTCTGTTGATTCAGCGTCAGGTGCTTTGAGACAAAGGGCAAGCGGGACAAAAGGCTTTTTGTTACTTACTAGGACATTTGAAGTTATTCAGCCTCTATATGTGTGTTCGTCTCATTTCACCATACACCGCAGATAGCACAATGTTCTTAAGAACTGAGCAGAGACACctgtattgtactttttttgtgCTTCAATATGCCAATTGAATAATGGGTTTTAGAATAATCTTTATTAGCCCAAAAAAAGTATAAGTGTCacgttttagttattttttctgcacatacatatttttctggAACAGCTACTAGACGCATCTTAAACTTTTAGTTCATTCATCTTCCCGAAACTCGAAACGCCAATCACCTATATAGTTTGCAGATGCACCGTCAAACTCAATGAGTTTAGAAGTGCAGTCACCAGCCAGGCTGATGTTGACGTGCTGTCTTGGCTTTTTGTCCTTTGAGTGCGGTATTGCATCGTGTTGCCTGGGTGCCAAATACTAACAACTGTCACCGACTCCAATGCTAGCTGGAAGACTGTAGGCacctttccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatacccTTTGTGTTGAGAAAGCAGTGGTGCGGATTGCAGCCGCCCTCATCGTCTCAGACCATGAAGAGAGCTGTGCACTGTGTAGGTAGGTTCGCTCTGCTCATTCGTTGGTGCCATTCTTGTGCATTCTGTCACTTCCTAGGAGGATGACTTTCTACTGCTTCAAGCGGTTGAAAAGGAGTCCTTT

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18035 PTPRO; receptor-type tyrosine-protein phosphatase O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138936 lncRNA upstream 90402 11793168 ~ 11793535 (+) True G110930
TU138920 lncRNA upstream 211489 11671569 ~ 11672448 (+) True G110916
TU138877 lncRNA upstream 533820 11349884 ~ 11350117 (+) True G110883
TU138835 lncRNA upstream 763202 11120390 ~ 11120735 (+) True G110849
TU138673 lncRNA upstream 1514006 10369715 ~ 10369931 (+) True G110722
TU139023 lncRNA downstream 120764 12022810 ~ 12024549 (+) True G111008
TU139091 lncRNA downstream 284562 12186608 ~ 12187768 (+) False AMCG00006624
TU139099 lncRNA downstream 448711 12350757 ~ 12353363 (+) True G111063
TU139186 lncRNA downstream 718663 12620709 ~ 12629968 (+) True AMCG00006636
TU139201 lncRNA downstream 857525 12759571 ~ 12760841 (+) True G111148
AMCG00006608 mRNA upstream 93758 11773986 ~ 11790179 (+) True AMCG00006608
AMCG00006609 mRNA upstream 148306 11734683 ~ 11735631 (+) True AMCG00006609
AMCG00006610 mRNA upstream 177113 11658887 ~ 11706824 (+) True AMCG00006610
AMCG00006606 mRNA upstream 561964 11305891 ~ 11321973 (+) True AMCG00006606
AMCG00006601 mRNA upstream 764468 11116560 ~ 11119469 (+) True AMCG00006601
AMCG00006617 mRNA downstream 85414 11987460 ~ 12000919 (+) True AMCG00006617
AMCG00006620 mRNA downstream 111040 12013086 ~ 12014321 (+) True AMCG00006620
AMCG00006616 mRNA downstream 129609 12031655 ~ 12054027 (+) True AMCG00006616
AMCG00006624 mRNA downstream 243699 12145745 ~ 12323278 (+) True AMCG00006624
AMCG00006629 mRNA downstream 424789 12326835 ~ 12328153 (+) True AMCG00006629
TU138516 other upstream 2316586 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 3159871 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 3707151 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 4228743 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 4971683 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 1109138 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 9035451 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 9146290 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 9240819 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 12130067 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055098 False 1158 mRNA 0.54 11 NC_007115.7 184863 ~ 191736 (-)
grasscarp (Ctenopharyngodon idella) CI01000068_01028235_01048221.mRNA True 5465 mRNA 0.53 26 CI01000068 1028235 ~ 1049678 (+)