RNA id: AMCG00006616


Basic Information

Item Value
RNA id AMCG00006616
length 7813
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00006616
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12031655 ~ 12054027 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agcaggTCATCTGAATCCTGCCTGATTGTGCTGGGGTTTCAGTCGCTGCGCCGCCCACCAGCCCGAGCCTTTTTAGACACCAGAGTCATAAACAGCAAACCATTTCCAGCTGAAGTGGTTAACTAAAAGCCGTATTTCAATCTGACACGTTTTTCACGTTGAAGTTTCCCCCCCGAACTCACACATGCGCAGTAACGTCGACCCTGCTTGTGTGTGCCTTTAAGAGGTTCGGTTCATTCGCAGTGGGATTGGTTTCAAGTGAcgtcattcttttatttttatcccaaTGACCTCATCCTTTGGTTGAAGTTTAGTGACCAGtgaatctttcttttttttttttttttttattttgctttttagttttcttttggttttgtttggttgcttGTCGTGAGGCAAAGTTGTGCAGCCAGGCTCGGATGTGACAAAAGAAGACACCATGTGGAAATGGACTTTCTCTCAGCCGTTTCTAGCAGAATAAGTACTTAAGCATGAATAACTGAAGAAATAAAGGTGGAGAATGATGTAATCCCTACACTGCCCGGGAAAAAGCATCTTTTGTGTCAATTGTGCAGTGGTGTGAAAGTTTCCCCTCCTGCAAACCATCTTCCAGTGAATTAGACGTAGTGGATGCAGCTTACTGTTTGGCACAGactctgtatttaaacacaaacacataaaaggGGAGAGTTTTTCTTTGAGTGAGCGAGGCTTTTCTTTACAAATGGGCTCAGCTTTTCTTCTGCCAAGCACCACCAGGATGACATCATATATCGCTGACACAATGAAACAGTTCATCTCTTGAGGACCCTTCTAGTTACGTCACTGGTGTGGACTTAGAAAGCAGccgagtgagtgagagtgagagcgagagagcgagagagaccgGGAAGAGGGGCGGGTGGGAGACGCCACTGTTGGTTCGCCATGTCGGAGCGGTGGAGTGCCGTCCAGGACATGGGGGCCGAGAGCCTGGTGGCCCTGCTGGAGAGCGGCATGGACAGAGTGCTCCTCATCGACAGCCGTCCCTTTGTGGAGTACAACACCTCCCACATCCTGGAGGCCATCAACATCAACTCCTCCAAGCTCATGAAGAGGAGACTGCAGCAAGACAAAGTGCTCATAACGGAGCTCATTCAGCACTCGGCCAAGAAGAAGCTGGAGGTGGACAGCAGTCAGGAGGTTGTGGTGTATGACCAGAGCTCAGCCGACGTGGCATCTCTCTCCTCTGAAGCCTTCCTCACAGTGCTCTTGACCAAACTGGAGAAGAGCTTCCGCTGTGTGCACCTCCTCACAGGTGGTTTTGCCGAGTTCTCTCATGACTTCCCTGGCCTGTGTGAGGGGAAGTCTACTCTGGTCCCCTCCTGCATCTCCCAGCCCTGCCTTCCTGTCACCAACGTGGGGCCGACGCGCATCCTCCCACACCTGTACCTCGGCTGCCAGAGAGATGTGCTCAACAAGGATCTGATGCAGCAGAATGATATCGCCTATGTCCTCAATGCCAGTAACACCTGTCCAAAGCCCGATTTCATCCCGGAGTCCCACTTTCTCAGAGTGCCAGTGAATGACAGCTTCTGTGAGAAGATCTTGCCCTGGCTGGACAAGTCAGTGGAGTTTATAGAGAAAGCGAAAGCATCGAATGCGCGGGTTTTGGTCCACTGCTTGGCTGGAATTTCAAGATCTGCCACGATTGCTATAGCGTATATCATGAAGAGAATGGACATGTCTCTGGATGAAGCTTACAGgtttgtgaaggaaaaaagaCCCACCATTTCCCCCAACTTCAATTTCCTCGGGCAGCTTTTGGATTTTGAGAAGAAGATCAAGACCCCGATGGGACCCATGGGCACCATTGCCAAGCTGAAGTTGCTGCACTTGGACAAGGTTGGAGAAGCCCTCTCAGGACAGGAGTCTGGGGACAGCTGCACGAGTGCCGGAGCCCCACTGAGCTGCGCCTTATCGGCCGAGAGTGTGGACCAGGGCCTGAAAGACGCCCTGACGCTGCCCTGCTCACTCGTTGACTCCCTGGGTCTGAGCAGCACAGAGGAGCGGCTGCTGGCCCAAGGGCTGAATGGCCTGCATCTGTGCACGGAGCACGTGGAGGACAGCAGCAAGCTGAAGCGTTCCTTTTCCCTCGATATCAAGTCGTACGGGGCCAGTGGCACTGGGACTTTGCATGCTTTCGCTCCACCAGAAGAGAACATAGAATACTACAAACCGTCTGCCTTCATGGAGGCCAGCAAACCATGCCAGTTCTCCCCTGTAGAGGAAGTGTCAGAACAGACAACACCAGAGAGGAGTCCTGACACAGAGCAGGCCGACACGGTCAACCaaatcagcagcagcaacagcagcagcacccgGCAGGCTAGTATGTCCAAGCCTCCGCCCAGGTCACACCTTCACCCTCTGCACAGAAGTGGCAGCGTGGACGACAACCGCAAAGCCACCAACTTCCTGTTTGGCCTGTCCAGTAGCCAGCAGCACCTGGCTAAGCCTGGCGCCGGGGTGGCACTGAAGGGCTGGCACTCGGACATCCTGGCTCCTGTCACCGCCTCCTCCCTGGCCAACAGCTGGTACTTTTCTCCCGAAGTCTCACGCTTCTACTCCACCTCTGCCATCTTTGCCGGGGGAGGGGGGTCCGGATATTCGGCCTACAGCTGTGGGCAACTGCCCAGCTTCGAGCAGATGGGCTGCGTGCGGCGGCGGCAGAAGAACGGCGACCGGGGCGACTCGCGGCGCAGCTGGCACGAGGAGAGTTCCTTCGAGAAGCAGTTCAAGCGCCGGAGCTGCCAGATGGAGTTCGAGGAGGGCATGTGCGAGAGCCGCTCCAGGGAGGAGCTAGGGAAGGTGGGCAGCCAGTCCAGCTTCTCTGGCAGCATGGAGATCATTGAGGTGTCCTGAGGGTCTGGCAGCCGGGGGAGCGGGGCTGCTGCTCTGCACCGCCGGGGCAGGCGAGTGAAGGAGGGCGAGTGAAGGTCACCCTCTGGTGTTTCTGGTggtgtgaaatgtgtgttttgaggcATCgtgaaaatcaaatacaactACTTTTTAATCCAAATCCGATTCTCTCATTCACATTTTATGGAGAAGCTATAggtctcatttaaaaaataaaaataaaataaaaatctgttaataaaaaaattacagctGATTGCTCTAAAACGATGTCCCACTGAAGTCCAATTTCTTATTTATACgagtatatagtgtgtatgtgtgtcatatatatatatatatatatatatacacacacacacacacacacacacacagtgctctCAATAGGTAATTATTGTAACTCAGTACAGCTGTATGTGTTGTCCAGTACATTGGAGCACATGTCCAGACACTATCTGCTTACAAATTTGACTGGcagtttttgttaaatgttttttaagcattttttccacatttttacTAAAGATTGAGCcgttacagtttttgttttctgtttgcgtgtatatatattttttcttctacctTAAGTTTGTTCTAATTTTTGGCAACCTTGAATGACAATGGTGCGTCACAGATCCATACCAATACACAGAGCCTGATCCGAAGCACAATTTAGGACGTGATGATAAATTGTGTGAGCGTTGGTATTGAGTTTCTACCACATTTGTAAACTTGCTTGCCAAGGTTGCTCAAAATCGAAACAGTACCTCACAGGAGTCAAATTAAGgggctttttaaaaacattgatctTTTGGATGTTTGTAGCTTGTTGACAACTCAAATCTCAGGTCTTATAGTGAGCAGCGGGAAGAACTAATCGCAGACACCTCTTCGAATGAAAACTGTTGTGGATTTTGTATGGCATGATTGATAAGGGATCGCAGTGGTAAAGGGCTCCTACAGAGAGTGAAAAGTAAGTCATCTGGATGTGTTGAGGCTGCTGACTGACGGGCTTTAGTAAGTGATTTGCAAGAGAAAGAGGCCGGGACTCTCTCAGGCATTGCAGCGCCACCAAGCACATCTGATTCACAGCGTTTCTACAGACAAAGGCATACAGACATCAAACCTCATCCTATACTCATCTATACTAGACAGACTCGAGTTAATTGGGTTATTCAGCATTCACAGGGTTTGGTCTCCTGTACCTTGTAATATTGCACTATTAtcacttaaagaaaaataatggatTATTTCTTTCAGAGTATGTGAACAGCCAAGGTCTGGCTTTAGAAAGAGGAAAGCAACCGCACTGTGCAGCACGTGGTCAGCTTCAGGGGTTCAGGCACAAAAAAAGTGTGCCACAGGACTGACAAAATGAAGTCATCATTGGCGGGAATGCGGCTCAGTACTTGATGAGCTAATGAGCTTGAAAACAAAAGTAGGGATTTTGCTTCAGCGTTTTTCAAGATTCATGGTCTCTGGTCATACGATGGTATACAGAATCAACATCTACAGAAAGTCAGGTCTGATCAATATGGGGCCAGAGTATGAATGCATGTTGCCTGATCCATGGTCAAGCAATGTTGTCCATCGTCGAACGGTCTCTGATGCCCGTGTCTCAGACTGTCAGGGCACTGTTTCATTGGCTGACTGCACCAGGTAGCCTTTCATGGGTGCATCTGGGACTAAGAAGTGTTTGCTGCCCCTTCTCGTGGTTTCATATACAAGAAAAGGGCAACATCTTCAACTGGTTTCTTACCAATTCTTTTGAGGTTTATAGTTTGACATTTGGTTTCtctggtgatttttttttctttgagtaTAAATGGCAGAATGATAGTTACCTTCAGTTGCCTTTCTAAACCAACTctgcacatttcaaatgttcaaaCTGCAAAAATCCCCTACGAAGCTACGTGCAAGATGATGGTATTTGGAACCATCCCGCTCTGAGCACATGCGTGTTTTGATGCACGACCGAGGTCTCCCGTGCACACTATCTGGAAGgactggtttaatttaaaatccactCCAGATAAAAATTACAAGTGATAAACAGTGCATCTAAACAGTTCTGCATTTCAGCTGATGCAGATGTGAATTGCAGATGGAAAAAACAGGGAAGTATTTGGATCTCCTTCAGAAAAATTAATGCCAAATCTGCACAGTGTTACTGCTGCGTAACAAAGCACTGAAAGCGGCTGAAGTTGGCATGTTCtttaacacacatacacgcCAGTTGTGATTATTTTATCGCAGCATTATAAACTCTTTTCCACCTGTCCGAGGTGAGGAGTGAGTGTCTGATGACGCCATCTTGGTCAGTTCTCAGTAATGGCAAGGAGCGAATGGTCACCCTTGTCTCCTTGCCGAGTCCTGCTGTCCCAGACAAGATGCACACGTCTGCTGAGAAGGGGTGTGAATCCGTGATGTTCCAGACCTGCAGCCAGTCTGGAACACCAAGTCATGTGCCGGTGAAGGAGGAAATCTTCAAGTAGATTCATCACGTTCTGTGTTTGACTTGGTGTTCAAGGTCACATAGGAAATGGATGTGTAACGTTAATTCAGGTAAATGTTTTTACTTCAAAGAGATtgctttctgcatttgttttgttcatgtatGATTACACCTTGGTTGTACATGTTGTTTAATCACCTGATTTCAGTGTAGGAACCCAGAGGTTTTGTGCTCTGGTCTAATGGGGGGTCATTTTGCTTATTGTCTCCATCCAGAAGAAGCCATAAAGTGATGTGAAGACCACAGTGTACTTTACCATAGAATCTACCATGGAATGAACCTGAATAAgagtggaataaaaaaaaaaaaaaaaagatatcccATAGGTATAATCCAGTGAGATAATACAGTGCCAAATATGTCCATTCCTTTTCCTGGGGCAAGTGTTTTCTGGAAATTGATTTTTGGCCTTGGGTTTCCCCAAATTACCTTTTTGTTACTTCAGTGAGCATCGCCACACTCAGTTCTGCGCGCAAAGAGGGGGGCGGCAGGACAGACCTGAGGGCTAGCCAGATTGCTCAGGTGGCGTTGCCAATCCTATGCAACGCAGTTGACGTTGAGTGCAGTTTTTCCAAAAAACCAGGACAAGTTTTGACCTAGCAAGTCAGCAAATTTAGTTTGTTTGATATACAGAtgaaatatatagatatgtgATTTAAGCATTAGGTTACTTTAAGAACAAATGTAAGTATTTCAGATTTGTTATAATCTCAACAGTTgctataaaggaaaaaaaataaaatgtattctttataaagccttactgtttttttttggtgttcaAAATTcattatatgattatattatatataactatatttcCGGGCTGAAAGatattctattttgtatttaatgtatatccGAAATTCCCAAAATTCAGAATATTGAAAACCTGGAATAACTTTTCCATTGCCAGAGAGCACTGGCCCCAGGTAGCGCAGGTGACTATGGATTTGGGTGTTCTGCATTGCAGGATTCTCATGGGTGACAATAACTGTagtgggtaaaaaaaaaatctagattaTTTGCAAAAAAGTGCCTTGATCTCAGCCCTTTATATAAGTAACTGATCCACAATTATACAgatcagtaaataataaataaacacgaTGTTCACAGATTACATGTAAAACCAAAAGCTTGCAGCggcataatttatattaaattgtagTTTCTGAAACCTCTATGCTAAATAGCACAAACTGAAGGCTGGGGCCTGGAATGGGCCACAATATATACTTTCATTATCTTTAATCATTAAACAGACAAAGTCAGTGATCCCACAGACGGAGTGCTGACTGCACTGCCTTCAACACCGGATCATCCAAGGCATAATTTACGATTGATTCAGACTAATACTTGTTGGTAATAGTTTTACTTTAAAAGGTTTCTCAAACTAATTTGACACCTTTTGGGGTGATAGGGACAATAATCTCATACAGATTGGAGTTAAAAGACTCATTGGAACCAGAGAAAGAGTTCCGCAATCCCTGGGAACATCATAATGAATCATGAGTATGGGATATTGCAGATAGGTTTACACTGTGAGAAAATGCAAGGATTTCATCTGTGCCTTCAATTATGAATTTTACTCAATGACTTCTTTAATTCAGTATGAAGACCGCTTTCAATATTTTCACATTCAGGcccatattcaaattaaatcatcaCCTCTTTTGTGTTCGATGCTAAAGTATCCCAGACCCCAAGAGTTATGTAATGTCCTTGAATTTTGGAGCTTGCGATCTCACTGAAAAGTAGAGCTAGAttattgccttttttattttttagtctCAGATTTCTGCTTGGCCCTTGACTTCCTTGATTTTTGAGCATTTTCGGTTTCTATTTGCTAATCAGACGAGAGCTTAGCACATTTCCTTCTGCTCAGGTGAcccttgatttattttatttcttttggtgtttatttttcGGCCTGCTGTGAAGAGGTCGGTTATTCTTGTGCTGATAGGAATGGTCAAGCTCAGATTCCACTTGTGAACGAATAAGCGGTAGTCTGTACACCGTGTTTAGGCTACTTTGATCAAAGAAAAGAAGTAGACGATGGTACTGTACCACAGTCAAGTTTTCAAGGCCACTTCGTCATCATTTTCTTTACCATGTGTGGGTCTTCATGTTAAGAATAATGTGATTATAATATCTAATTCTAATATTATGTACAATATCTTTTGAGGGTGATATGTATCATGTCCATATACGTGATTATATATGAAAGATCACTTTCATACATTCTATGGACTGTCtcttgaatgaataaatgaatatatatatatatatttcacaactAGGTCCATATTCTGTCTACAGTATGTACACacgtatgtatatgtgtgtatgtgtgtgtatatatatatatatatatatata

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function

KEGG:

id description
K04459 DUSP, MKP; dual specificity MAP kinase phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139023 lncRNA upstream 7106 12022810 ~ 12024549 (+) True G111008
TU138936 lncRNA upstream 238120 11793168 ~ 11793535 (+) True G110930
TU138920 lncRNA upstream 359207 11671569 ~ 11672448 (+) True G110916
TU138877 lncRNA upstream 681538 11349884 ~ 11350117 (+) True G110883
TU138835 lncRNA upstream 910920 11120390 ~ 11120735 (+) True G110849
TU139091 lncRNA downstream 132581 12186608 ~ 12187768 (+) False AMCG00006624
TU139099 lncRNA downstream 296730 12350757 ~ 12353363 (+) True G111063
TU139186 lncRNA downstream 566682 12620709 ~ 12629968 (+) True AMCG00006636
TU139201 lncRNA downstream 705544 12759571 ~ 12760841 (+) True G111148
TU139202 lncRNA downstream 705544 12759571 ~ 12760841 (+) False G111148
AMCG00006620 mRNA upstream 17334 12013086 ~ 12014321 (+) True AMCG00006620
AMCG00006617 mRNA upstream 30736 11987460 ~ 12000919 (+) True AMCG00006617
AMCG00006614 mRNA upstream 129609 11883937 ~ 11902046 (+) True AMCG00006614
AMCG00006608 mRNA upstream 241476 11773986 ~ 11790179 (+) True AMCG00006608
AMCG00006609 mRNA upstream 296024 11734683 ~ 11735631 (+) True AMCG00006609
AMCG00006624 mRNA downstream 91718 12145745 ~ 12323278 (+) True AMCG00006624
AMCG00006629 mRNA downstream 272808 12326835 ~ 12328153 (+) True AMCG00006629
AMCG00006630 mRNA downstream 278307 12332334 ~ 12333254 (+) True AMCG00006630
AMCG00006623 mRNA downstream 302026 12356053 ~ 12374775 (+) True AMCG00006623
AMCG00006631 mRNA downstream 327300 12381327 ~ 12387504 (+) True AMCG00006631
TU138516 other upstream 2464304 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 3307589 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 3854869 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 4376461 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 5119401 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 957157 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 8883470 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 8994309 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 9088838 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 11978086 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile