RNA id: TU139024


Basic Information

Item Value
RNA id TU139024
length 3996
RNA type TUCP
GC content 0.36
exon number 4
gene id AMCG00006618
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12017869 ~ 12024549 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTTCGGTTTAATACTCAGGAAGCAGGCGAGTAGAGATGGTGGGTGGCAAAGTAAAGAAGCCAGGGAAACGAGGTCGTAAACCAGCCAAGATTGACTTGAAGGCCAAGCTGGAACGCAGCCGTCAGAGTGCGCGGGAGTGTCGGGCCAGGAAGAAGCTGAGGTATCAGTACCTGGAGGAGCTGGTGTCCAGCAAGGAAAGAGCCATCTGTGCACTGCGGGAGGAGCTGGAGATGtacaaGCAGTGGTGCTCAGCAATGGATCAGGGAAAGATTCCTTCAGAAATTAAGGCTCTTCTGACTGGAGATGAACATAAGATGTCACAGAGTACTAGCAAGATATCCAAGAACAGCAAGAAtaacacaaacagcaacagtCAATaGTGAAGAATCTGTCTTGAATCCGAACTAATTGGACAATTCTGCAGCAGCCAACCCGTGTGTATACAGCTTCCAAATGATAGAACATGTATTACAAATGGAGGAAATGTTTATATTAGTGATTGGTTAGTGAGGATTGTATATAAGACCTGAATGCTGAACGCAAAGCCCTTTAGAATTTGTCCGGCTGTAAAGGGGGTGTGAGTACAATACATTGATATTGACTTTGCTTACTTATACAGGTAAGCATTGAATGGGGACTATGTTCCTTTAAGAGatggaagatttattttttatctgagTTGACCTGGGAATCAACGGAAatcttttactgtattttgttctcCGAAATTTGACAcgcattttatttcaaataactgCTTTGGCATCTGATTACTGACAGTAAATGCACAAACTCCCCATCCCATTTCCCTGTAAATACATATGAGAAATGAGGATCCTCTACAATAGTATCTGAATGATCCACGGCTGCAGAGCTGCAGTTTTACTTCAGTGTCCAGAGCTATTGCTTAGACTGTTCGGTGCATCTTTCCAGTATTAAGTtacttacaatacaatacaaatgtcaaAACCATCCTACTGCAAATCAGTTCTACTGCTTGGTTAAATATGGTCTGTTACAGAGGATTGTAAATGATCCTCACTGTTGtgaattgaaaaacatttgaaaatatgtaacTCTTTTAGACCCCATgaagtaaagaaacaaaacacctgCTTTCTCTAGTTACATCTGTGGGCCAAAAACACCCAAAACTGCTTTAGAATATGTAATTGAGTAGTATTCAATCCAGATTTGTAGCATAGAGAATATTTGTTCCTGCTATTTGGTGTAGttagaaaagcaagaaaaactACAAAGCATGAGAGCCTCCCACttattgtaatacaatacaatacaatactgcaGGCACTTTTTATGTCTATAGCTGTTGGGTAATTAATGGTATAAACAGTGAAAGTTCAGCAACATGTACCACTCTTATCTCCTAAGTGTTTGATTTTGGTCTGTAAGACataagaaaattatttaatctatttaaatttCCCCTTTTTATGAATGATCCGCATATTCTTTCCTGACTCCCAGATATCGGTTTTGATCTTAAACAGTGTTCTGCTAGTGCCATATTTCTAAAAcctttacagaaattaaaatgacccTTACTGGGATTTGCAAAGACGTTTATAGCCGgacatattaaaatgactatTGTACAGCCCCTTACAATGACTGAAGGTGACATTTTATACTATATCCTTTCTGTCAGGGGGAATATTTtggaagtagtagtaataaaataagtaatttttgTCATCAATTTCatcaaaaactatatatatttttgttgcaCTTCTGCcctaaatattttattcctcAAATACCAATAAAACCATGAGGGACATTTTACGTTCTGTGgcccaaaacataaataaaaagctgagtTTTGATTTGTCCCTGTAAAGATTATGTACTTAGTGGACTGCCAGTTGTTTGTCCCTGTGTCATTCTGGTTCTATTCCAAGATGTTTCGAAAGCAGGAGTCCACCTCAACGTGTCTAGTGGAAACTAGGCATAATATTACTTTGGTAAAACCAGCAGCTACCTGCTTTGACCGACATTCATTTTTGTAGTTTCTTTTGTGTCATTAGTATTTTCCCATACAAACTTTTGAATGTCCTGCACATCAGTGTGCATATTTAACCACAAATCAGTTGTGTCTTGATTATTCTGTACCTAGTCATATAAAAGACAAATCCTTTTAAAAAGCTAAAGTGCATAAAAATGTCAGTcgataaaaatgtgtttaatctgTCCTGATTGTAACATGCTTGTGATCTAAGGTGCAAGATTAGTGGTATAATGTTTAAGTAGTCTATAAcatataatataacatataacataaaatatgtacTGAGGCATAGGTATTCAGGCAGATTGATGCAAAATATTGGATTTAaagcagtggaaaaaaaacttctaaaataaaaccatgaaaaacataattcgATAACTACTGAGACTGATTGTTGTGTAGTAGGTGTCTTATTACCAAATTGTGTGAGAAAAACCGATAGAAATTAGTTCTTTGTCCGAAAAGCATCAGCAGCTAGGCCTCAGTTTGTAGATCTTTCAAAGAATGAAACTTGATTGTTAAGGCCACAATGCACATGTAAGAAAAGCTTGAAAACCAAAATCTCTGACTAAGTCACCCTTTTCAAGGGAGAGATGTTTTTAGAGAAGGGAGCTTGGAAAAATTCTCATATTTGCGTAAGTAGCCCTAGATAATTCCAGTAAACTCTCTAAGAAATTAACCCAAAACAGCTGTGCACCttttgatgtttaaaatgttttaataatatgatTGAAAATTTGAAATCATGATTCCAGGGAGGAAGGGGTGGGGACGTGTTGAACCGAAATGAGGTCTTGTTTgttggatttaaaatgtgtctatttttgtgtaatgtttaagcACTTTCAaaattttaagtatttatgttGAGTGGTTTTATTTCCACCTCTGAGGGCAGTTTAGTCCTGCTCATGCAGTTTGCCAGCAGGTACAACATATTCTCCCCTGACTTGCATTCTCAATGAAAACTGTTTTGATCCACAATCCCTTCTGAATGTATCTGACCAATGTTAGGCTACCTGGGATTGTTGTCTGATATTTGGACAACTTAGAGAAGTGTTTGCGTCTTGCTCTGAGATGCACTGCAGAAAGAAGCAGTCTCCAGATCTCTCCCCATCTGCTGAGCTAAATGTGGTAAAAACCCTGGAACATCTCCGATTGGCTCAAGAAGGTTCCTGGAAGGACAAACCACTGAAGAAtctctttaagaaaaaaaaaaaaagacagcagggGGGAgagaatttaaattattctacaGTGCAAGGGTGGAATATTTCacaatgatttttaaaagaTAACCCTTGCCTGGAGAACTAGGATATTTAAACTGGAGAACAGGAACAGAATAAAGCATATTAGCACTGgccaaaaacaacacagaaaaaaccTTCCAGtgtaagaaataatacaatattgaaatCTAAGAGTACTAtctatacacaaacatacataacataagaacatttaaatcagAATGTGTAACAGTTCGAATTTAATTTCCTTGACCAGTGtcaaattttgtattttacatgttgcacagcacaaaaaatacaaagatgaATCAGTCACTGGTAAAGGTGGACTGTATagcaatacagtatttaaaagcaaactgaATGACAGAAGGCCGTTGATGAGGGCAGGCTGTTGGTGCATGTCCAAAGGTCTGTTCAGAGATTTCACATCCATCACCCATCTTGCACTTCAGAGCAAATAAAGCGAAACACTATAACCTTCTCTTTAATGAATTAGCTGGTccttgattttttattttattttattttttacaatgctTTGTACGAGTtagtatttaaaagtatattgtgATGTCCAAATgctatattttttacttttacaaaataagctatatgattgtaaaatgtatctgaaTGCTCAaaagtgcaaatatatatttttcctttagacTAAATAGAACTGTCAGTTTATACTATTAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138964 lncRNA downstream 115714 11899963 ~ 11902168 (-) True G110957
TU138948 lncRNA downstream 221540 11794536 ~ 11796342 (-) True G110942
TU138946 lncRNA downstream 224381 11790052 ~ 11793501 (-) True G110940
TU138945 lncRNA downstream 228648 11788940 ~ 11789234 (-) True G110939
TU138921 lncRNA downstream 345399 11671569 ~ 11672483 (-) True G110917
TU139038 lncRNA upstream 25061 12049609 ~ 12054955 (-) False AMCG00006621
TU139067 lncRNA upstream 46842 12071390 ~ 12130383 (-) False AMCG00006622
TU139217 lncRNA upstream 735023 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA upstream 735023 12759571 ~ 12760836 (-) False G111158
TU139248 lncRNA upstream 930062 12954610 ~ 12959628 (-) True G111182
AMCG00006619 mRNA downstream 33067 11965268 ~ 11984815 (-) True AMCG00006619
AMCG00006615 mRNA downstream 86723 11907802 ~ 11931159 (-) True AMCG00006615
AMCG00006611 mRNA downstream 178156 11825901 ~ 11839726 (-) True AMCG00006611
AMCG00006613 mRNA downstream 262402 11738219 ~ 11755480 (-) True AMCG00006613
AMCG00006612 mRNA downstream 398058 11612595 ~ 11619824 (-) True AMCG00006612
AMCG00006621 mRNA upstream 24946 12049494 ~ 12069660 (-) True AMCG00006621
AMCG00006622 mRNA upstream 46855 12071403 ~ 12122799 (-) True AMCG00006622
AMCG00006625 mRNA upstream 112743 12137291 ~ 12140405 (-) False AMCG00006625
AMCG00006626 mRNA upstream 317199 12341747 ~ 12346094 (-) True AMCG00006626
AMCG00006627 mRNA upstream 326219 12350767 ~ 12354277 (-) True AMCG00006627
TU138641 other downstream 1910597 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 2465802 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 3018618 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 3223820 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 3293530 8722388 ~ 8724352 (-) True G110507
TU139089 other upstream 112634 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 851744 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 851744 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 1430884 13455432 ~ 13503228 (-) True AMCG00006663
TU139625 other upstream 2335680 14360228 ~ 14364422 (-) True G111489

Expression Profile