RNA id: AMCG00006621


Basic Information

Item Value
RNA id AMCG00006621
length 7809
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00006621
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12049494 ~ 12069660 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATGATACAAGGTTCCTGCTGCAGTTGATTTCATGCAATAGGCTACATTTATAGAGTCTCGTATTTACAAAATACCCGAATCCCCTTtagatacattttgatatttctTTCATAAACGCGGAAGTACCTCTTAGACGATAAGCCATTACCCCCCGAATGAACTTTAAAAGTTGGGTAAATCGTGCTGTTCAGATATCGCAGGACTGAAACTACGTGGTAAATAATGGCTAGCTATTAGTCACATAAAATAGGGAAATAGCAGCTGCAAGTCCTCACGACAACAACACTTAAGGGAAATTGGCGTGCAGGAGCCCAGGCTGCAGTCTCACCATGGGGGCCGAGCAAAGTGCCGACTCTGAGCACAAGCACTCAGACTTCAACACCACAGTTGTGCCCTCTCCAGCTAAGCAGAAAGCCAAAATGGATGACATCGTCGTCGTGACGCAAGGGACCCCTTCCCTGCGGAACATCCACAACGACCCTGATGTCATAAAGCTGCAAGAAATCCCCACCTTCCAGCCTCTCCTGAAAGGGGTCCTCAGTGGGCAGACgtcccccagcagcagcagggtggAGAAGCTGGACTCGGTGCAGGTGCTGCAGCTGTGCCTGAGGTACCAGGACCACCTGCACCAGTGCGCAGAGGCCGTCGCCTTCGACCAGAACGCCCTGGTCAAGAGAATCAAAGAGATGGACCTGTCGGTGGAGGCCCTATTCAGCATCATGCAGGAGCGGCAGAAACGCTATGCCAAGTACGCCGAGCAGATCCAGAAAGTGAACGAGATGTCCGTGATCCTGCGGCGCATCCAGATGGGCATTGACCAGACGGTGCCCCTGATGGAGAAACTCAACAGCCTGCTGCCCGAGAGCGAGCGGCTGGAGCCCTTCACCATGAACGCAGACAGGGAGCCCAAGTAGGACGGGTCTGTGTGGGTACGGCACTCTCGGACACCAGTGGGAGGGCACGTGTGATGACAGGCATGAGTGATTGGGTGTTGACAACTTCACCAAGGCTTTTCTTCTCAGCGTTGACTTGAGTAACATGTCACATTACGTTCTCACGATGTTAGATTTAACAAGGGGGAAGTTCCCCCATAAAGTAGGGAGAAacagacatgtttttattaacatgacatgtacaaatatatattggttaTGTAACCCTGTGAAGTGCATTGAAACAATCcacatgttttattcatggttTGGTTCTCTCCAGACGAGTGCGATGGGTTGGATGGCCTCGTTTGTAACACTTCATATGTTGTAATATGTTCAGCTCTCCTTTTCCAGAAATGTTGGTGGAAGGTCAAATACTCAGACCAGCAGTAATGTCTGTCACTGTGGTGCTGTTGCTTGTCAGGTTTTAATGGTTCATCATCATTGCCAACTGTGTAGTTTGCATGAGACTAGGATTGTTTGATGAGATTCAGACTGTGTGTCACGGTCTCTACTGCACATTTAAACTCAAATTGTGTAATTTGAGAGGACTCTCAACTGCTTCCTGTTTACATCAGTTTATACATTGGATGACTTGGTAAAAGTGGGCTTTCAGAGATTTTATATTTGATCTATGcgtgtatgtataatataaatgtataaaatagtaACATATAATatagtgtgtatttatatacataaacctatatatacacacacacttattaacaacacaaattaagcagttgtaaataaacattcctgttttttgtgttttatctaTTTAAGATAATGTACTGAAAAATGCTAAACTTTTTACcaagtacattttcatttttatcaaaATCGGCTAAACCtagtaaaaatacaaacttatTTACAGTCTTTTCTGTGTTGGCGAGTTTTGCATTACCGGTTTGTCTGCATTGGGcaaattaatgttattgttattgaagACTGACAAATCTATCCTATAAGTAGTGGACAAAGTGCTTGCTACTGCTTGGATTATATGATGTAcatagtgtatatatgtattaagaaaatcagtgttttaaaaaagtttCACAATGAATTCTGTACACTCGTCTGTCGAAGGATGCGATCACTTATTTTATAGGTCATGCATTCACCAATTACTGCTGGTCTAATGGTGTACAGAAATGCATGGATTTCAGGCCAGTTGATTGGTCTAATAAATCCCCTTCAAAAccaatttataaatgtgtttattacaaaaataatttcaatgaTCGGTCATAGGTCCAGACTTTTGAGCATAGTAACTCCACCAGATATAattcttaattattataattcctAAGGTGTGGggtctatatatttttctctcatcTGTATTTTCTGTGCCCCCAACCTCCTTAAATAACTGCATTATCCTCcttgcttatttttcttttgtcatcTTGTGGAACGTGTGTTAAAGCAAACTATTTGCCAAAGGCATGGGGTCCCAGCAGAGCTCTCAATCAGTCCTTAACTTGTCAGGATTAGCAACTAGATACTATAAAAGGCTACAATagctgtattattaatttagactGATCAATTAATTAACTTGAAAATGTCACAAAGAAAAATTGAGATTAGTATGATCTATTTCAATTTTCtgagaccaaaacaaaacaggtgcacctgtttttcatatttcaaaccTTCAGAAATGTAAGTGATGAGAAATTCTAGTTATTTTCAAAGATAGATGTTGTcatgtgtgtctcagtgcatGACATACACTTCCTTCATTACATCACCCCCCATTTCTTAACCAAGCGGCATTGCAGTGACAGCCCAGAAAGTGCCCCAGTCTGCCTCTTACTCATGTGATGCAGTCATGACACTAGTAAGAAAAGGTTACTCATATCATTGCAGGCCTGAGTAGGTTCCCCAGGGGTTTGTTGATATAATGCTGAAATTCAGGCTTGTAAAGAACGGGACTCACTCCTGGCCAGTTATTGTTAAATGACAGGATCAGAagaaagctttaaaaacaaGCCGACCACAAGAACAATGCGTATATAGAGTACCgtttcagattttatttcaaCAGTCAACATATATCTATGCTTCTTACAACTTCAgaacacagattaaaaataaaataaaaaatgtacaaacttTGCCAAAATGAAAGTGAACTCTATTATTCAGACAACATGACAGACCTCTCATCACACTCCTTCAGCTGTACCATCTTCATTCGATGATGATGTTGTAGGTTTGTTCCTCTATGAGATCAAATGATAAAAAGCTCAGGAATTTGGGGGTAATTTTATCCACACAGGCATGCACAgcaatatgtatgtgtgtgtagatatatatatatatatatatatatatacacacacatacacacatatacatacgtGTGTACATACTGTAGACAGAATATGGACCTagttgtgaaatatatatatatatattcatttattcattcaagaGACAGTCCATAGAATGTATGAAAGTGATCTTTCATATATAATCACGTATATGGACATGATACATATCACCCTCAAAAGATATTGTACATAATATTAGAATTAGATATTATAATCACATTATTCTTAACATGAAGACCCACACATGGTAAAGAAAATGATGACGAAGTGGCCTTGAAAACTTGACTGTGGTACAGTACCATCGTCTACTTCTTTTCTTTGATCAAAGTAGCCTAAACACGGTGTACAGACTACCGCTTATTCGTTCACAAGTGGAATCTGAGCTTGACCATTCCTATCAGCACAAGAATAACCGACCTCTTCACAGCAGGCCgaaaaataaacaccaaaagaaataaaataaatcaagggTCACCTGAGCAGAAGGAAATGTGCTAAGCTCTCGTCTGATTAGCAAATAGAAACCGAAAATGCTCAAAAATCAAGGAAGTCAAGGGCCAAGCAGAAATCTGagactaaaaaataaaaaaggcaataaTCTAGCTCTACTTTTCAGTGAGATCGCAAGCTCCAAAATTCAAGGACATTACATAACTCTTGGGGTCTGGGATACTTTAGCATCGAACACAAAAGAGGtgatgatttaatttgaatatgggCCTGAATGTGAAAATATTGAAAGCGGTCTTCATACTGAATTAAAGAAGTCATTGAGTAAAATTCATAATTGAAGGCACAGATGAAATCCTTGCATTTTCTCACAGTGTAAACCTATCTGCAATATCCCATACTCATGATTCATTATGATGTTCCCAGGGATTGCGGAACTCTTTCTCTGGTTCCAATGAGTCTTTTAACTCCAATCTGTATGAGATTATTGTCCCTATCACCCCAAAAGGTGTCAAATTAGTTTGAGAAACCTTTTAAAGTAAAACTATTACCAACAAGTATTAGTCTGAATCAATCGTAAATTATGCCTTGGATGATCCGGTGTTGAAGGCAGTGCAGTCAGCACTCCGTCTGTGGGATCACTGACTTTGTCTGTTTAATGATTAAAGATAATGAAAGTATATATTGTGGCCCATTCCAGGCCCCAGCCTTCAGTTTGTGCTATTTAGCATAGAGGTTTCAGAAActacaatttaatataaattatgccGCTGCAAGCTTTTGGTTTTACATGTAATCTGTGAACAtcgtgtttatttattatttactgatcTGTATAATTGTGGATCAGTTACTTATATAAAGGGCTGAGATCAAGGCACTTTTTTGCAAAtaatctagattttttttttacccactACAGTTATTGTCACCCATGAGAATCCTGCAATGCAGAACACCCAAATCCATAGTCACCTGCGCTACCTGGGGCCAGTGCTCTCTGGCAATGGAAAAGTTATTCCAGGTTTTCAATATTCTGAATTTTGGGAATTTCggatatacattaaatacaaaatagaatatCTTTCAGCCCGgaaatatagttatatataatataatcatataatgAATTTtgaacaccaaaaaaaaacagtaaggctttataaagaatacattttattttttttcctttatagcAACTGTTGAGATTATAACAAATCTGAAATACTTACATTTGTTCTTAAAGTAACCTAATGCTTAAATcacatatctatatatttcaTCTGTATATCAAACAAACTAAATTTGCTGACTTGCTAGGTCAAAACTTGTCCTGGTTTTTTGGAAAAACTGCACTCAACGTCAACTGCGTTGCATAGGATTGGCAACGCCACCTGAGCAATCTGGCTAGCCCTCAGGTCTGTCCTGCCGCCCCCCTCTTTGCGCGCAGAACTGAGTGTGGCGATGCTCACTGAAGTAACAAAAAGGTAATTTGGGGAAACCCAAGGCCAAAAATCAATTTCCAGAAAACACTTGCCCCAGGAAAAGGAATGGACATATTTGGCACTGTATTATCTCACTGGATTATACCTATgggatatctttttttttttttttttattccactcTTATTCAGGTTCATTCCATGGTAGATTCTATGGTAAAGTACACTGTGGTCTTCACATCACTTTATGGCTTCTTCTGGATGGAGACAATAAGCAAAATGACCCCCCATTAGACCAGAGCACAAAACCTCTGGGTTCCTACACTGAAATCAGGTGATTAAACAACATGTACAACCAAGGTGTAATCatacatgaacaaaacaaatgcagaaagcaATCTCTTTGAAGTAAAAACATTTACCTGAATTAACGTTACACATCCATTTCCTATGTGACCTTGAACACCAAGTCAAACACAGAACGTGATGAATCTACTTGAAGATTTCCTCCTTCACCGGCACATGACTTGGTGTTCCAGACTGGCTGCAGGTCTGGAACATCACGGATTCACACCCCTTCTCAGCAGACGTGTGCATCTTGTCTGGGACAGCAGGACTCGGCAAGGAGACAAGGGTGACCATTCGCTCCTTGCCATTACTGAGAACTGACCAAGATGGCGTCATCAGACACTCACTCCTCACCTCGGACAGGTGGAAAAGAGTTTATAATGCTGCGATAAAATAATCACAACTGgcgtgtatgtgtgttaaaGAACATGCCAACTTCAGCCGCTTTCAGTGCTTTGTTACGCAGCAGTAACACTGTGCAGATTTGGCATTAATTTTTCTGAAGGAGATCCAAATACTTCCCTGTTTTTTCCATCTGCAATTCACATCTGCATCAGCTGAAATGCAGAACTGTTTAGATGCACTGTTTATCACTTGTAATTTTTATCTGGagtggattttaaattaaaccagtcCTTCCAGATAGTGTGCACGGGAGACCTCGGTCGTGCATCAAAACACGCATGTGCTCAGAGCGGGATGGTTCCAAATACCATCATCTTGCACGTAGCTTCGTAGGGGATTTTTGCAGtttgaacatttgaaatgtgcagAGTTGGTTTAGAAAGGCAACTGAAGGTAACTATCATTCTGCCATTTAtactcaaagaaaaaaaaatcaccagaGAAACCAAATGTCAAACTATAAACCTCAAAAGAATTGGTAAGAAACCAGTTGAAGATGTTGCCCTTTTCTTGTATATGAAACCACGAGAAGGGGCAGCAAACACTTCTTAGTCCCAGATGCACCCATGAAAGGCTACCTGGTGCAGTCAGCCAATGAAACAGTGCCCTGACAGTCTGAGACACGGGCATCAGAGACCGTTCGACGATGGACAACATTGCTTGACCATGGATCAGGCAACATGCATTCATACTCTGGCCCCATATTGATCAGACCTGACTTTCTGTAGATGTTGATTCTGTATACCATCGTATGACCAGAGACCATGAATCTTGAAAAACGCTGAAGCAAAATCCCTACTTTTGTTTTCAAGCTCATTAGCTCATCAAGTACTGAGCCGCATTCCCGCCAATGATGACTTCATTTTGTCAGTCCTGTGGCACACTTTTTTTGTGCCTGAACCCCTGAAGCTGACCACGTGCTGCACAGTGCGGTTGCTTTCCTCTTTCTAAAGCCAGACCTTGGCTGTTCACATACTCTGAAAGAAATAatccattatttttctttaagtgaTAATAGTGCAATATTACAAGGTACAGGAGACCAAACCCTGTGAATGCTGAATAACCCAATTAACTCGAGTCTGTCTAGTATAGATGAGTATAGGATGAGGTTTGATGTCTGTATGCCTTTGTCTGTAGAAACGCTGTGAATCAGATGTGCTTGGTGGCGCTGCAATGCCTGAGAGAGTCCCGGCCTCTTTCTCTTGCAAATCACTTACTAAAGCCCGTCAGTCAGCAGCCTCAACACATCCAGATGACTTACTTTTCACTCTCTGTAGGAGCCCTTTACCACTGCGATCCCTTATCAATCATGCCATACAAAATCCACAACAGTTTTCATTCGAAGAGGTGTCTGCGATTAGTTCTTCCCGCTGCTCACTATAAGACCTGAGATTTGAGTTGTCAACAAGCTACAAACATCCAAAagatcaatgtttttaaaaagcccCTTAATTTGACTCCTGTGAGGTACTGTTTCGATTTTGAGCAACCTTGGCAAGCAAGTTTACAAATGTGGTAGAAACTCAATACCAACGCTCACACAATTTATCATCACGTCCTAAATTGTGCTTCGGATCAGGCTCTGTGTATTGGTATGGATCTGTGACGCACCATTGTCATTCAAGGTTGCCAAAAATTAGAACAAACTTAaggtagaagaaaaaatatatatacacgcaaacagaaaacaaaaactgtaacgGCTCAATCTTTAgtaaaaatgtggaaaaaatgcttaaaaaacatttaacaaaaactgCCAGTCAAATTTGTAAGCAGATAGTGTCTGGACATGTGCTCCAATGTACTGGACAACACATACAGCTGTACTGAGTTACAATAATTACCTATTGagagcactg

Function

GO: NA

KEGG:

id description
K20819 BORCS5, LOH12CR1; BLOC-1 related complex subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138964 lncRNA downstream 147326 11899963 ~ 11902168 (-) True G110957
TU138948 lncRNA downstream 253152 11794536 ~ 11796342 (-) True G110942
TU138946 lncRNA downstream 255993 11790052 ~ 11793501 (-) True G110940
TU138945 lncRNA downstream 260260 11788940 ~ 11789234 (-) True G110939
TU138921 lncRNA downstream 377011 11671569 ~ 11672483 (-) True G110917
TU139067 lncRNA upstream 1730 12071390 ~ 12130383 (-) False AMCG00006622
TU139217 lncRNA upstream 689911 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA upstream 689911 12759571 ~ 12760836 (-) False G111158
TU139248 lncRNA upstream 884950 12954610 ~ 12959628 (-) True G111182
TU139505 lncRNA upstream 1934093 14003753 ~ 14004141 (-) True G111389
AMCG00006618 mRNA downstream 24945 12017869 ~ 12024549 (-) True AMCG00006618
AMCG00006619 mRNA downstream 64679 11965268 ~ 11984815 (-) True AMCG00006619
AMCG00006615 mRNA downstream 118335 11907802 ~ 11931159 (-) True AMCG00006615
AMCG00006611 mRNA downstream 209768 11825901 ~ 11839726 (-) True AMCG00006611
AMCG00006613 mRNA downstream 294014 11738219 ~ 11755480 (-) True AMCG00006613
AMCG00006622 mRNA upstream 1743 12071403 ~ 12122799 (-) True AMCG00006622
AMCG00006625 mRNA upstream 67631 12137291 ~ 12140405 (-) False AMCG00006625
AMCG00006626 mRNA upstream 272087 12341747 ~ 12346094 (-) True AMCG00006626
AMCG00006627 mRNA upstream 281107 12350767 ~ 12354277 (-) True AMCG00006627
AMCG00006628 mRNA upstream 306248 12375908 ~ 12380970 (-) True AMCG00006628
TU139024 other downstream 24946 12017882 ~ 12024548 (-) False AMCG00006618
TU138641 other downstream 1942209 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 2497414 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 3050230 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 3255432 8787818 ~ 8794062 (-) True G110520
TU139089 other upstream 67522 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 806632 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 806632 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 1385772 13455432 ~ 13503228 (-) True AMCG00006663
TU139625 other upstream 2290568 14360228 ~ 14364422 (-) True G111489

Expression Profile