RNA id: TU139038


Basic Information

Item Value
RNA id TU139038
length 5347
lncRNA type sense_over
GC content 0.39
exon number 1
gene id AMCG00006621
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12049494 ~ 12069660 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttttcttttgtcatcTTGTGGAACGTGTGTTAAAGCAAACTATTTGCCAAAGGCATGGGGTCCCAGCAGAGCTCTCAATCAGTCCTTAACTTGTCAGGATTAGCAACTAGATACTATAAAAGGCTACAATagctgtattattaatttagactGATCAATTAATTAACTTGAAAATGTCACAAAGAAAAATTGAGATTAGTATGATCTATTTCAATTTTCtgagaccaaaacaaaacaggtgcacctgtttttcatatttcaaaccTTCAGAAATGTAAGTGATGAGAAATTCTAGTTATTTTCAAAGATAGATGTTGTcatgtgtgtctcagtgcatGACATACACTTCCTTCATTACATCACCCCCCATTTCTTAACCAAGCGGCATTGCAGTGACAGCCCAGAAAGTGCCCCAGTCTGCCTCTTACTCATGTGATGCAGTCATGACACTAGTAAGAAAAGGTTACTCATATCATTGCAGGCCTGAGTAGGTTCCCCAGGGGTTTGTTGATATAATGCTGAAATTCAGGCTTGTAAAGAACGGGACTCACTCCTGGCCAGTTATTGTTAAATGACAGGATCAGAagaaagctttaaaaacaaGCCGACCACAAGAACAATGCGTATATAGAGTACCgtttcagattttatttcaaCAGTCAACATATATCTATGCTTCTTACAACTTCAgaacacagattaaaaataaaataaaaaatgtacaaacttTGCCAAAATGAAAGTGAACTCTATTATTCAGACAACATGACAGACCTCTCATCACACTCCTTCAGCTGTACCATCTTCATTCGATGATGATGTTGTAGGTTTGTTCCTCTATGAGATCAAATGATAAAAAGCTCAGGAATTTGGGGGTAATTTTATCCACACAGGCATGCACAgcaatatgtatgtgtgtgtagatatatatatatatatatatatatatacacacacatacacacatatacatacgtGTGTACATACTGTAGACAGAATATGGACCTagttgtgaaatatatatatatatattcatttattcattcaagaGACAGTCCATAGAATGTATGAAAGTGATCTTTCATATATAATCACGTATATGGACATGATACATATCACCCTCAAAAGATATTGTACATAATATTAGAATTAGATATTATAATCACATTATTCTTAACATGAAGACCCACACATGGTAAAGAAAATGATGACGAAGTGGCCTTGAAAACTTGACTGTGGTACAGTACCATCGTCTACTTCTTTTCTTTGATCAAAGTAGCCTAAACACGGTGTACAGACTACCGCTTATTCGTTCACAAGTGGAATCTGAGCTTGACCATTCCTATCAGCACAAGAATAACCGACCTCTTCACAGCAGGCCgaaaaataaacaccaaaagaaataaaataaatcaagggTCACCTGAGCAGAAGGAAATGTGCTAAGCTCTCGTCTGATTAGCAAATAGAAACCGAAAATGCTCAAAAATCAAGGAAGTCAAGGGCCAAGCAGAAATCTGagactaaaaaataaaaaaggcaataaTCTAGCTCTACTTTTCAGTGAGATCGCAAGCTCCAAAATTCAAGGACATTACATAACTCTTGGGGTCTGGGATACTTTAGCATCGAACACAAAAGAGGtgatgatttaatttgaatatgggCCTGAATGTGAAAATATTGAAAGCGGTCTTCATACTGAATTAAAGAAGTCATTGAGTAAAATTCATAATTGAAGGCACAGATGAAATCCTTGCATTTTCTCACAGTGTAAACCTATCTGCAATATCCCATACTCATGATTCATTATGATGTTCCCAGGGATTGCGGAACTCTTTCTCTGGTTCCAATGAGTCTTTTAACTCCAATCTGTATGAGATTATTGTCCCTATCACCCCAAAAGGTGTCAAATTAGTTTGAGAAACCTTTTAAAGTAAAACTATTACCAACAAGTATTAGTCTGAATCAATCGTAAATTATGCCTTGGATGATCCGGTGTTGAAGGCAGTGCAGTCAGCACTCCGTCTGTGGGATCACTGACTTTGTCTGTTTAATGATTAAAGATAATGAAAGTATATATTGTGGCCCATTCCAGGCCCCAGCCTTCAGTTTGTGCTATTTAGCATAGAGGTTTCAGAAActacaatttaatataaattatgccGCTGCAAGCTTTTGGTTTTACATGTAATCTGTGAACAtcgtgtttatttattatttactgatcTGTATAATTGTGGATCAGTTACTTATATAAAGGGCTGAGATCAAGGCACTTTTTTGCAAAtaatctagattttttttttacccactACAGTTATTGTCACCCATGAGAATCCTGCAATGCAGAACACCCAAATCCATAGTCACCTGCGCTACCTGGGGCCAGTGCTCTCTGGCAATGGAAAAGTTATTCCAGGTTTTCAATATTCTGAATTTTGGGAATTTCggatatacattaaatacaaaatagaatatCTTTCAGCCCGgaaatatagttatatataatataatcatataatgAATTTtgaacaccaaaaaaaaacagtaaggctttataaagaatacattttattttttttcctttatagcAACTGTTGAGATTATAACAAATCTGAAATACTTACATTTGTTCTTAAAGTAACCTAATGCTTAAATcacatatctatatatttcaTCTGTATATCAAACAAACTAAATTTGCTGACTTGCTAGGTCAAAACTTGTCCTGGTTTTTTGGAAAAACTGCACTCAACGTCAACTGCGTTGCATAGGATTGGCAACGCCACCTGAGCAATCTGGCTAGCCCTCAGGTCTGTCCTGCCGCCCCCCTCTTTGCGCGCAGAACTGAGTGTGGCGATGCTCACTGAAGTAACAAAAAGGTAATTTGGGGAAACCCAAGGCCAAAAATCAATTTCCAGAAAACACTTGCCCCAGGAAAAGGAATGGACATATTTGGCACTGTATTATCTCACTGGATTATACCTATgggatatctttttttttttttttttattccactcTTATTCAGGTTCATTCCATGGTAGATTCTATGGTAAAGTACACTGTGGTCTTCACATCACTTTATGGCTTCTTCTGGATGGAGACAATAAGCAAAATGACCCCCCATTAGACCAGAGCACAAAACCTCTGGGTTCCTACACTGAAATCAGGTGATTAAACAACATGTACAACCAAGGTGTAATCatacatgaacaaaacaaatgcagaaagcaATCTCTTTGAAGTAAAAACATTTACCTGAATTAACGTTACACATCCATTTCCTATGTGACCTTGAACACCAAGTCAAACACAGAACGTGATGAATCTACTTGAAGATTTCCTCCTTCACCGGCACATGACTTGGTGTTCCAGACTGGCTGCAGGTCTGGAACATCACGGATTCACACCCCTTCTCAGCAGACGTGTGCATCTTGTCTGGGACAGCAGGACTCGGCAAGGAGACAAGGGTGACCATTCGCTCCTTGCCATTACTGAGAACTGACCAAGATGGCGTCATCAGACACTCACTCCTCACCTCGGACAGGTGGAAAAGAGTTTATAATGCTGCGATAAAATAATCACAACTGgcgtgtatgtgtgttaaaGAACATGCCAACTTCAGCCGCTTTCAGTGCTTTGTTACGCAGCAGTAACACTGTGCAGATTTGGCATTAATTTTTCTGAAGGAGATCCAAATACTTCCCTGTTTTTTCCATCTGCAATTCACATCTGCATCAGCTGAAATGCAGAACTGTTTAGATGCACTGTTTATCACTTGTAATTTTTATCTGGagtggattttaaattaaaccagtcCTTCCAGATAGTGTGCACGGGAGACCTCGGTCGTGCATCAAAACACGCATGTGCTCAGAGCGGGATGGTTCCAAATACCATCATCTTGCACGTAGCTTCGTAGGGGATTTTTGCAGtttgaacatttgaaatgtgcagAGTTGGTTTAGAAAGGCAACTGAAGGTAACTATCATTCTGCCATTTAtactcaaagaaaaaaaaatcaccagaGAAACCAAATGTCAAACTATAAACCTCAAAAGAATTGGTAAGAAACCAGTTGAAGATGTTGCCCTTTTCTTGTATATGAAACCACGAGAAGGGGCAGCAAACACTTCTTAGTCCCAGATGCACCCATGAAAGGCTACCTGGTGCAGTCAGCCAATGAAACAGTGCCCTGACAGTCTGAGACACGGGCATCAGAGACCGTTCGACGATGGACAACATTGCTTGACCATGGATCAGGCAACATGCATTCATACTCTGGCCCCATATTGATCAGACCTGACTTTCTGTAGATGTTGATTCTGTATACCATCGTATGACCAGAGACCATGAATCTTGAAAAACGCTGAAGCAAAATCCCTACTTTTGTTTTCAAGCTCATTAGCTCATCAAGTACTGAGCCGCATTCCCGCCAATGATGACTTCATTTTGTCAGTCCTGTGGCACACTTTTTTTGTGCCTGAACCCCTGAAGCTGACCACGTGCTGCACAGTGCGGTTGCTTTCCTCTTTCTAAAGCCAGACCTTGGCTGTTCACATACTCTGAAAGAAATAatccattatttttctttaagtgaTAATAGTGCAATATTACAAGGTACAGGAGACCAAACCCTGTGAATGCTGAATAACCCAATTAACTCGAGTCTGTCTAGTATAGATGAGTATAGGATGAGGTTTGATGTCTGTATGCCTTTGTCTGTAGAAACGCTGTGAATCAGATGTGCTTGGTGGCGCTGCAATGCCTGAGAGAGTCCCGGCCTCTTTCTCTTGCAAATCACTTACTAAAGCCCGTCAGTCAGCAGCCTCAACACATCCAGATGACTTACTTTTCACTCTCTGTAGGAGCCCTTTACCACTGCGATCCCTTATCAATCATGCCATACAAAATCCACAACAGTTTTCATTCGAAGAGGTGTCTGCGATTAGTTCTTCCCGCTGCTCACTATAAGACCTGAGATTTGAGTTGTCAACAAGCTACAAACATCCAAAagatcaatgtttttaaaaagcccCTTAATTTGACTCCTGTGAGGTACTGTTTCGATTTTGAGCAACCTTGGCAAGCAAGTTTACAAATGTGGTAGAAACTCAATACCAACGCTCACACAATTTATCATCACGTCCTAAATTGTGCTTCGGATCAGGCTCTGTGTATTGGTATGGATCTGTGACGCACCATTGTCATTCAAGGTTGCCAAAAATTAGAACAAACTTAaggtagaagaaaaaatatatatacacgcaaacagaaaacaaaaactgtaacgGCTCAATCTTTAgtaaaaatgtggaaaaaatgcttaaaaaacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138964 lncRNA downstream 147441 11899963 ~ 11902168 (-) True G110957
TU138948 lncRNA downstream 253267 11794536 ~ 11796342 (-) True G110942
TU138946 lncRNA downstream 256108 11790052 ~ 11793501 (-) True G110940
TU138945 lncRNA downstream 260375 11788940 ~ 11789234 (-) True G110939
TU138921 lncRNA downstream 377126 11671569 ~ 11672483 (-) True G110917
TU139067 lncRNA upstream 16435 12071390 ~ 12130383 (-) False AMCG00006622
TU139217 lncRNA upstream 704616 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA upstream 704616 12759571 ~ 12760836 (-) False G111158
TU139248 lncRNA upstream 899655 12954610 ~ 12959628 (-) True G111182
TU139505 lncRNA upstream 1948798 14003753 ~ 14004141 (-) True G111389
AMCG00006618 mRNA downstream 25060 12017869 ~ 12024549 (-) True AMCG00006618
AMCG00006619 mRNA downstream 64794 11965268 ~ 11984815 (-) True AMCG00006619
AMCG00006615 mRNA downstream 118450 11907802 ~ 11931159 (-) True AMCG00006615
AMCG00006611 mRNA downstream 209883 11825901 ~ 11839726 (-) True AMCG00006611
AMCG00006613 mRNA downstream 294129 11738219 ~ 11755480 (-) True AMCG00006613
AMCG00006622 mRNA upstream 16448 12071403 ~ 12122799 (-) True AMCG00006622
AMCG00006625 mRNA upstream 82336 12137291 ~ 12140405 (-) False AMCG00006625
AMCG00006626 mRNA upstream 286792 12341747 ~ 12346094 (-) True AMCG00006626
AMCG00006627 mRNA upstream 295812 12350767 ~ 12354277 (-) True AMCG00006627
AMCG00006628 mRNA upstream 320953 12375908 ~ 12380970 (-) True AMCG00006628
TU139024 other downstream 25061 12017882 ~ 12024548 (-) False AMCG00006618
TU138641 other downstream 1942324 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 2497529 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 3050345 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 3255547 8787818 ~ 8794062 (-) True G110520
TU139089 other upstream 82227 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 821337 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 821337 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 1400477 13455432 ~ 13503228 (-) True AMCG00006663
TU139625 other upstream 2305273 14360228 ~ 14364422 (-) True G111489

Expression Profile