RNA id: AMCG00006622


Basic Information

Item Value
RNA id AMCG00006622
length 9555
RNA type mRNA
GC content 0.47
exon number 21
gene id AMCG00006622
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12071390 ~ 12130383 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCACTGGATGTTACACATCGGGAAGTGGTAGTGAAAGGCGCTCTCCCTCACCCCTTTGCCTTGACGCTCTTCGATGACACGCTGTACTGGACCGACTGGAACACGCACTCCATCCACTCCTGTAACAAGGTTACTGGAGAGGACCGCAGAGAGGTCCACACGAACATCTTCTCCCCCATGGACATCCACGTCTTCAACCAGAGAAGACAGCCAGACTcatttaccAATCCGTGTGAGGGCAATGGCGGGTGTTCCCACCTGTGTCTGATGTCTCCTGTGGAGCCCTTTCACCAGTGTGCCTGTCCAACGGGGGTGCAACTGCTGGACGACGGCAAGACCTGCAAGGACGGTGCCACGGAGTTGCTCCTGCTCGCCCGCCGCACCGACCTGAGGCGGATCTCTCTAGACACCCCGGACTTCACTGATATCGTGCTGAACCTGGAAGACATCCGTCACGCTATCGCCATCGACTACGACCCCGTGGACGGCCACATCTACTGGACCGACGATGAGGTGCACGCCATTCGCAGATCCTACCTGGATGGCAGTGGGAGTCAGTTTGTGGTGACGTCGCAAGTCAACCACCCCGACGGCATCGCGGTGGACTGGATCGCCAGAAACTTGTACTGGACTGACACGGGCACCGACCGCATCGAGGTGACGCGGCTCAATGGCACCATGCGCAAAATCCTCATCTCCGAAGACCTGGACGAGCCTCGTGCCATAGTTCTGGATCCCATGTCTGGatATATGTACTGGACGGACTGGGGAGAAATTCCTAAGATTGAGCGTGCAGCGCTGGATGGAACTGACAGACTGGTGATGGTCAATACGTCTCTTGGCTGGCCAAATGGACTGGCACTGGACTATGCTGAAAGCAAGATTTACTGGGGAGATGCCAAGACCGACAAGATTGAGGTAATTAACATGGACGGCACGGGGCGTATGGTCCTGGTGGAGGACAAGCTGCCGCACATCTTTGGGTTCACGCTGCTCGGGGACTTCATCTACTGGACGGACTGGCAGCGGCGGAGCATCGAGCGCGTGCACAAGCGCACTGCCGAACGAGAGATCATCATCGATCAGCTGCCCGACCTCATGGGCCTCAAGGCCACCAACGTGCACCAGATCATGGGTACGAATCCCTGTGCTGATGATAATGGGGGTTGCAGCCATCTCTGCCTGTACAAGCCCCAAGGTGTGCAGTGTGCCTGTCCCATCGGCCTGGAGCTCATCAGTGACATGAGCACCTGCATTGTCCCTGAAGCCTTCCTGTTGTTCTCGAGACACACTGACATCCGACGCATCTCCTTggaaaccaacaacaacaatgtggCCATCCCCCTCACGGGTGTGAAAGAGGCCTCAGCCCTGGACTTTGATGTCACTGACAATCGCATCTACTGGACAGACATCACACTGAAGACCATCAGCCGGGCCTTCATGAATGGCAGCGCATTGGAACATGTGGTGGAGTTTGGTCTGGACTACCCAGAGGGCATGGCAGTGGACTGGCTGGGGAAAAACCTGTACTGGGCAGATACTGGCACCAACCGCATAGAGGTGGCCAAGCTGGACGGACAGCACCGCCAGGTCCTGGTGTGGAAGGACTTAGACAGCCCCAGGGCTCTGGCTCTGGATCCAGCAGAGGGctTCATGTACTGGACTGAGTGGGGTGGCAAACCCAAGATTGACCGCGCAGCTATGGATGGAACCGGGCGCATCACACTAGTGCCCAACGTGGGCCGAGCAAATGGCCTAACTATTGACTACGCTGAACGGAGGCTCTACTGGACCGATCTGGACACCACTCTCATAGAGTCCTCTAACATGCTCgGCCAGGAGCGCGAAGTCATCGCGGACGACCTGCCCCACCCGTTCGGCCTGACGCAGTACCAGGACTATATCTACTGGACCGACTGGAGCCAGCGCAGCATCGAGAGGGCCAACAAGACCAGTGGGCAGAACCGCACCATCATCCAGGGCCACCTGGACTATGTCATGGACATCCTGGTGTTCCACTCGTCCCGGCAGGGCGGCTGGAACGCCTGCGCCTCCACCAACGGCCACTGCTCCCACCTGTGCCTCGCTGTGCCCATTAGCAGCTTCGTGTGCGGCTGCCCGGCGCACTACTCGCTCAACTCCGACAACAAGACCTGTAGTGCCCCGACATCCTTCCTCCTCTTCAGTCAGAAAACTGCCATCAACCGAATGGTGATAGATGAGCAGCAGAGTCCTGACATCATCCTGCCCATCCACAGCCTGCGAAACGTGCGTGCCATCGACTATGACCCCCTGGACAAGCACCTCTACTGGATAGACTCGAAACAGAACTCTATCCGCAGAGCGCAGGAGGATGGCAATCAGAGTATGACCGTGGTGTCCAGCATCGTGGGCAACCAGAACCTCGGTCTGCAGCCCTACGACCTGAGCATCGACATCTACAGCCGCTTCATCTACTGGACCAACGAGATTACCAACGTCATTAACGTCACACGCACGGATGGCCGGAGGGTGGGTGTGGTGCTGCGGGGTGATCAGGACAAGCCCAGAGCCATCGTGGTCAACCCAGAGAGAGGGTACATGTACTTCACAAACCTGCAGGACAGGTCCCCCAAGATTGAGCGTGCGGCACTGGACGGCACTGAAAGGGAGATGCTGTTCTTCACTGGCCTTGGGAAGCCCGTCGCCCTGGCCATCGACAACGAGCTGGGCAAGCTGTTCTGGGTGGACTCGGACCTGCGCCGCATTGAGAGCAGCGACCTCTCGGGTGCCAATCGAATTGTCATAGAGGACTCGAACATCCTGCAGCCTGTGGGACTGACGGTGTTTGGAAACCACCTGTACTGGATCGACCGGCAGCAGCAGATGATCGAGAGGATCGACAAAGTCACCCGGGAGGGGCGCACCAAGATCCAAGCTCGGATCACCTCTCTGAGCGACATCCACGCCGTCAGCCAGCTGGACATGAAGGAGTACAggAAGCATCCTTGCACTTTGGACAACGGAGGCTGCTCACACATCTGCATAGTGAAAGGTGACGGCACCACGCGCTGCTCCTGCCCGGTGCATCTGGTGCTGCTGCAGGACGAGCTCTCTTGTGGAGAGCCCCCGACGTGCTCCCCGGAGCAGTTCTCCTGCTCCTCGGGGGACGTGGACTGCATCCCCCAGGCCTGGCGCTGCGACGGGTACCCGGAGTGCGACGACAGCAGCGACGAGGAGGACTGCCCGGTCTGCTCGGACACGGAGTTCCAGTGCAACAGCCGCCAGTGCGTGGACATCATCCTGCGCTGCAATGGAGAGATCAACTGCCAGGACAAGTCGGACGAGAACGACTGCGAAGTTCGTTGTCCAGTTGACCAGTTCAGCTGCTCCAATGGACAGTGCATTGGAAAACACAAGAAGTGTGACCAGAACACAGACTGCTCGAATAACTCGGATGAGCTCGGCTGCTATCCCACGGAGGAGCCGTCGCCGCAGTCCACCAACACCATCGGCTCCATCATCGGGGTGATCCTGGCGCTCTTCATTGTGGGAGCCATGTACTTCGTATGCCAGCGGGTGCTGTGTCCACACATGAAGGACGACGGAGAGACGATGACCAACGACTTTGTGGTCCACGGAGCCTCTTCTGTGCCTCTCGGATACGTGCCACACCCAAACTCCCTGTCCGGGTCGCTGCCAGGAATGTCGCGAGGGAAGTCGGTGATGAGCTCTCTGAGTATCATGGGGGGCAGCAGCGGACCTCCCTACGACCGTGCCCACGTCACCGGCGCCTCgtccagcagctcctccagcacCAAAGGCACTTACTTCCCACCGATCCTGAACCCGCCTCCTTCCCCCGCCACCGAGCGCTCACACTACACCATGGAGTTCGGCTACTCCTCCAACAGCCCCTCGACACACCGCTCCTACAGCTACAGGCCGTACAGTTACCGACACTTCGCCCCGCCCACCACGCCGTGCAGCACCGATGTGTGCGACAGCGACTACACGCCCAGCCGGCGCATCATCCCCGCGGCCAAGGGCTACACCAGCGACCTCAACTACGACTCTGAGCCCATCCCCCCGCCTCCCACCCCCCGCAGCCAGTACCTGTCTGCGGAGGAGAACTATGAGAGCTGCCCGCCCTCGCCCTACACGGAGCGCAGTTACTCCCACCACCTGTACCCCCCGCCGCCCTCGCCCTGTACAGACTCCTCCTGAGCCCACCGCCAGCCCCGCTCCCCCGGCCCCTCTTcacactgtaaatacaaattgtgcatattatgaggagagagagactatTATGAAAGTTGAAGAGGGGATGGGgattttgtacagtataaaagaTTTTTAAGAAATAGGGGGTGGGGTTAGAAAGGTGGACACTtgtacagtaaagaaaaaaatatttatatattttctaatacaGCATCTACTGGTTGTGCCATAGAagtttgtataaaaaataaaaaaataaacttgtacatggaaaaaagaaaaaaaaaatcacacagaaTACAATGCCTTAATCCAAGGGATGAAAAATACTACCTTCCGAAGAGGCAGAAGGAAAGAGTGCATTGAAGTGACAATTTGAAATGGAATTATCTGATgccaaaaaataacaaatgatcGCTGTACCTGGGACTGGAGCAGAGTTTAAAGGGGGGGTGAAACGTTCAAGACGCAAGAATACCTGTCAAAAGGGCTTTCAAAAACCAGCTCCACGGCCTCCAAACCGCAGCCACCTGATCACGAATGAATGTCGCTTCCCACGTTGCACTTCAGTCCGCGGAAAAGGTTGCATCTCTTGTACGGATCCGCTTCCTGGTCAGAGCAACACATTCCTCTCAAGAGAAAATGAAGAGATCCCACCGTGTCGTTTCCCTGTAAAGACACCCTCTCAAACGCAGGCCGCTGTCGTTTGAGTTCTTCAGCCGGATCGGCCCGTCATTGACATTTCTCCTCCAGTGTCAGCTCCCACCACGTGCTGCGGAATGCCTCTgaataattaaagcaataacGGATGGATACGTTTGATAATCAGTACTTGCGGCACCGTTCCACAGCTGCTCTCCGCACACCCAGCTATCTGTTGCCTGTTCACATCGAGACTCATTCTGACAGCTGCTCTCAACACTAGCGGATAGGTCTCGTCTCTTTTcttctcgctctctccctctccccaagTTTTGACAGGAGTACGTTACGTTCGGTACTATCAAACCTGTTTCTACTGTGTTAAAAGTGAGCTCAATCCAGTCGATGGAAGCCCGACTTCAGTGCCAGCTATGTTAACGGACAGCCCAGAAGTGCAAATGTAATGCCTTGCCTCTCGAACTTTTCAGAGACGGGAAATCGTGGTGGGGGGGGAAACACACGTGGCCACTTGGTCCTCAAAGGATCCAAGGTGGACTTACTACATTCAGAAGCAATTAACCAAAATGTTACGTTTTTATATCATTGTTTGAGGAACGTGCCAGACTGCTACTGTGGACATAACTGCTTCTAAGAACAGAAACCCCAAAGCATATCATGTGATGTGGGTGTTGTGTATCTGTCTGCCACATGCAGTACATATCTCTTTTCCCACCTAGTAGGGACACTTTTTCACTTAACCAAGGACAAGCAATCGTGCCTGACcagttttaaactgtttttaatcaaattttaaaTCCAGTGCCCggaaatgttttcaatatttttgtacCACATATTGTGTAGATATCGTATTTAtaagctataaaaaaaaatcgttAGTTTACTGTAAATCTATCCATTATATCCTTGCAGTACTTTCCTTGTAAGTTCTTACAGTATAtgcctcattttatttttctattaagtGTTAGTCTAAAAGTTTGGAGACAATCTAAGACAAAGACAATTAAATAAGATATCCAGGTATCCTAATGTTTTATCCTGAGAAATCCCCAGTGTTATGTtagttaaaacaaaccaacaaaaaaggaaaaatactatttttatattccactTCACAGCATGTGTTCAGTTATTTGAGATAGACTGCAGTGCCAAAAAGTCATTTGTACAACTTTAAATGTGTAGCAAAGGTTGCATATACCTTACAATCAATACTAATCAGTATGAATGTTAAGAGCATAGTCTTTTTGATGAGCTTTGCAAGGGACAGTGAATACTAGCGCAGTTTAATTCATTTGACCGATTCATTCTTTATCCCATTTTCACTTTAAACACTTGCATTCCAGCAAACAAATATGTAGACTTTGTGAGATGTCCTTCAGACACCGTAAAAAACAGTGATTCATATTGTTTGGAAGATACTACATGCAGACAAGGAGCCATCCGTTTggtttataattttatttttttatatataaatttcCCCCACACTCGCATGGTCTGCAATTGTAAATCATGGTTGGAACAATTCACTTGTTCATTTCATGTTAGGGTTgtccattaaaaataatccaagggcttttctttttcttttcagtcacCTTTGAGGTTCTGCTGTATATCACTGCACATtgtggaaaacattttcaatctgttttcacttcactgcagtacttaattTTTACAAATCTAATTTGTATGTCTTGTACTTTAAAGCTTTCCTTTCTTCTCTTTGTCCTACCACAGCTTGCCCTTCTGAATTAaccttcattttttaaatttttttgtgATATCCAATACTCTATAAAGTATTCCtgagatttttatttcttatactTAAAACTGGAAATTTTGAATTAACTGTACCTCAtctaaaatggtaaaatgtacCAGAGTGGTACTGTGGCATGCAGACTTAAGTTTTGTTTACAGCAACCTTGCAATGTACGGTGAAAAACTGAATAGGCTTGtcggtttttttttgttgtttttttttctcctttaaaagTTTTTGCTTTCATCACACCTggatgttttttagttttttttttttttttttttttttttaacgctTACAAAAAATTAAGgtacttgttttcttttgtaatctTCACAACAATATTTAGTAGCATTCAGAACTGTTTATTAAATTTGCAATTTTGAATCAAGAAGAGGTCTACCCATACTGTGTTTCACCCCAAAATGATTGTAAATTTCAATTGTCATTCTCTCCATgtctgccttttattttttcagcagacTAAGGATCTATACCAGCATGATATTCAGGATGTGAGGTGGAAACTTAGATTTCTACGTTGAAAgtatgctttttaattattaaaacaaaaatgtgtatatacacagacatacCTCAGCTGGTCATTGTTATCATTTGTAACTTGCGGTGGTCTGGTTAAGACAGTATTCTGCCTTTTCAAAAATGAGCCTTATTGGTTTTTAATCTGTTTACCAGGGTCCCTTTGACTGTTGATAGGATTAGTCAACATTTTATACATGGGAGCCAGTTTGATGTACATCTGCCAATCAGGGTTTAGCGAATTGCTGTGACCCAAACTGAATTGTAATTTATCTGTTTAAACGCCTTactttacagttttgtttctgaCTTTTCACTGTGGGAATGTGTAACTGGAACTCACTGTATTCCTGTCACTGTTTTTGAATAACCTCATCTCTGTGGTTTGTGTTAAGTGCTCAACACGGAAGATGGTAGATATGTTTTTGATGCTTCACCCCCAcgcatttgtttttcctcagttCTCTCtccattgtcctgttgtagaaaagcagttttgaaaGGTATTCTCCACTGGCATCAGGTTTTACTTTCTAAATGGTAAAACAACTGTTCCTCACATCTGGAGGAACTACCAGATCTCTCTCTAGTATGTTTACAAGGGCAACCTACTACTGTGAAGTATGTTACTCTCCAATTCCCATAAGTTAGTCTGACCTTCCTTTTCCTGTATTAATGCAAtcctattaatttaaatttcccTACCAACAAGGGCTTCACATTGACCCATGTTGTGCCACTGTCATTTAGGGAAGTTCATTGTAGGtacttttgctttattttatgataTGGAGCATTACTAGCACATTGCAATTTTACAAAAGGGTACCTCATTCAAGATTACATTACACTTGTGACTATTAGGTACCAAGTTCAAATGGTTTTCTAATTAACCGAAAACCTACAGGCATCTGAAAAGTACATTTCCTACATTCTGCATTAGATGGAACAGAATGCTTGATACAATTGCCACCCTAAATACACTTCTGATGACTCTGTGATGTTATGGATGTCTTTGATATTGCTGCTGTGAATGATGTTCAAAGTAAGGCAGAAACAAAGGAATCATTGAGTATTTGTTGACAAAGACCACGTTGGCACCAAGGCTTTGATTTGTCTTTTGGAAAATCAGAATTCAAGCAAGGCTGTCGGAACCGTTTTGTTCCATTTGTTTGAGAAACTTAAATCCTATTCCTTTTAGGCCATCAAATGCTAATATGGTTAGTGGAGCATTTGCTGTTCTGGAGTCAATACAGAGAAGTGCCCTAAAGGTTTATCTGTGGCCAGTGATGAATTTTGAGACCATACCGATGGAAGTGAAGCAAATCTTCAGTGGATTTGTAATGCGTAGATATAAAACACCCTTATCACCATAAAAACAGATATTGGAATTAAATTGACCTGACTGGTGAAATTTACATTGAACAATGTTGTCTCGGTAGGCAATCTCAATTATAGAAATGCAATCTATAATTTAATACTGATCAATTAAATGGTCGTGTTGGTAAATGTAGTAGTTTACAGATTTGGAAAAAAACTCTAAATACCATTCAGCCCTGGAGAGTAAGATTCGGCAGATTTCTGGAATTCTTCCCGCTGCCTGGATACTGTAGAAAGTTAAACTGATGTCCTTCAGGCTTGGATTTCAGTGCATGCTCTTTAGCTTCAGTTATTCATCAAATCTGTAGAAATAAAGATAAATCTGATAtggagcatgtttttttttataaagcattCACTAATGAATGTACCTAAAACCAAATGTTTGCAATTTAATATCCAGCAGTGTGTATTGGTTCCATTGTGGTGGAATATAGCATAgggaaatattaattttgctttttttaaatcaggctAAGAGCTTTGCCTGAAGTGTGGGTAACTTCAcaatttaagttaaaaacagCTGTTGTGATTAGTCCCCCTCGAGTAAAGGAGAAAATAACTGCAGGACCCTAACATTCGATATAATTCACAGAAGAACAGAGAAGagaattttgtacacatttttaatggttGAAAACgctcatttaaatttaaaagcacTTTTGGCTTCATGCAATTGCAGAGCTATGTTAGGCTTGGGAGAATATTTTTTGATACCTGAAAAGCCGTAAAGGTATTTGTtcgtatttgttttttcatccaTTTTGATACCATGGTGCTTTGCAAGGATGTATATTCAAGATGACCAACATTTGGTTAGCCCTatccattttttttccactaaCACGCTTTACTTTTTGTAAATTGATTGCTTTACATGTTAGCTGTGTATAAACAGACCTGTACAGCCCTTTCAGTAACTATTATAAGCTGTTGTAACTAAATGAAATGttgatttttataataaaattgaG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K03068 LRP5_6; low density lipoprotein receptor-related protein 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139038 lncRNA downstream 16448 12049609 ~ 12054955 (-) False AMCG00006621
TU138964 lncRNA downstream 169235 11899963 ~ 11902168 (-) True G110957
TU138948 lncRNA downstream 275061 11794536 ~ 11796342 (-) True G110942
TU138946 lncRNA downstream 277902 11790052 ~ 11793501 (-) True G110940
TU138945 lncRNA downstream 282169 11788940 ~ 11789234 (-) True G110939
TU139217 lncRNA upstream 636772 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA upstream 636772 12759571 ~ 12760836 (-) False G111158
TU139248 lncRNA upstream 831811 12954610 ~ 12959628 (-) True G111182
TU139505 lncRNA upstream 1880954 14003753 ~ 14004141 (-) True G111389
TU139544 lncRNA upstream 2013529 14136328 ~ 14137746 (-) True G111421
AMCG00006621 mRNA downstream 1743 12049494 ~ 12069660 (-) True AMCG00006621
AMCG00006618 mRNA downstream 46854 12017869 ~ 12024549 (-) True AMCG00006618
AMCG00006619 mRNA downstream 86588 11965268 ~ 11984815 (-) True AMCG00006619
AMCG00006615 mRNA downstream 140244 11907802 ~ 11931159 (-) True AMCG00006615
AMCG00006611 mRNA downstream 231677 11825901 ~ 11839726 (-) True AMCG00006611
AMCG00006625 mRNA upstream 14492 12137291 ~ 12140405 (-) False AMCG00006625
AMCG00006626 mRNA upstream 218948 12341747 ~ 12346094 (-) True AMCG00006626
AMCG00006627 mRNA upstream 227968 12350767 ~ 12354277 (-) True AMCG00006627
AMCG00006628 mRNA upstream 253109 12375908 ~ 12380970 (-) True AMCG00006628
AMCG00006633 mRNA upstream 264113 12386912 ~ 12392701 (-) True AMCG00006633
TU139024 other downstream 46855 12017882 ~ 12024548 (-) False AMCG00006618
TU138641 other downstream 1964118 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 2519323 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 3072139 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 3277341 8787818 ~ 8794062 (-) True G110520
TU139089 other upstream 14383 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 753493 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 753493 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 1332633 13455432 ~ 13503228 (-) True AMCG00006663
TU139625 other upstream 2237429 14360228 ~ 14364422 (-) True G111489

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053199 True 2808 mRNA 0.62 14 NC_007115.7 90048 ~ 100007 (+)
grasscarp (Ctenopharyngodon idella) CI01000322_00147212_00162402.mRNA True 4147 mRNA 0.62 17 CI01000322 147039 ~ 162402 (-)