RNA id: TU139067


Basic Information

Item Value
RNA id TU139067
length 1511
lncRNA type sense_over
GC content 0.35
exon number 2
gene id AMCG00006622
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12071390 ~ 12130383 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTTTATTCTTCAAATGGTTTTCTAATTAACCGAAAACCTACAGGCATCTGAAAAGTACATTTCCTACATTCTGCATTAGATGGAACAGAATGCTTGATACAATTGCCACCCTAAATACACTTCTGATGACTCTGTGATGTTATGGATGTCTTTGATATTGCTGCTGTGAATGATGTTCAAAGTAAGGCAGAAACAAAGGAATCATTGAGTATTTGTTGACAAAGACCACGTTGGCACCAAGGCTTTGATTTGTCTTTTGGAAAATCAGAATTCAAGCAAGGCTGTCGGAACCGTTTTGTTCCATTTGTTTGAGAAACTTAAATCCTATTCCTTTTAGGCCATCAAATGCTAATATGGTTAGTGGAGCATTTGCTGTTCTGGAGTCAATACAGAGAAGTGCCCTAAAGGTTTATCTGTGGCCAGTGATGAATTTTGAGACCATACCGATGGAAGTGAAGCAAATCTTCAGTGGATTTGTAATGCGTAGATATAAAACACCCTTATCACCATAAAAACAGATATTGGAATTAAATTGACCTGACTGGTGAAATTTACATTGAACAATGTTGTCTCGGTAGGCAATCTCAATTATAGAAATGCAATCTATAATTTAATACTGATCAATTAAATGGTCGTGTTGGTAAATGTAGTAGTTTACAGATTTGGAAAAAAACTCTAAATACCATTCAGCCCTGGAGAGTAAGATTCGGCAGATTTCTGGAATTCTTCCCGCTGCCTGGATACTGTAGAAAGTTAAACTGATGTCCTTCAGGCTTGGATTTCAGTGCATGCTCTTTAGCTTCAGTTATTCATCAAATCTGTAGAAATAAAGATAAATCTGATAtggagcatgtttttttttataaagcattCACTAATGAATGTACCTAAAACCAAATGTTTGCAATTTAATATCCAGCAGTGTGTATTGGTTCCATTGTGGTGGAATATAGCATAgggaaatattaattttgctttttttaaatcaggctAAGAGCTTTGCCTGAAGTGTGGGTAACTTCAcaatttaagttaaaaacagCTGTTGTGATTAGTCCCCCTCGAGTAAAGGAGAAAATAACTGCAGGACCCTAACATTCGATATAATTCACAGAAGAACAGAGAAGagaattttgtacacatttttaatggttGAAAACgctcatttaaatttaaaagcacTTTTGGCTTCATGCAATTGCAGAGCTATGTTAGGCTTGGGAGAATATTTTTTGATACCTGAAAAGCCGTAAAGGTATTTGTtcgtatttgttttttcatccaTTTTGATACCATGGTGCTTTGCAAGGATGTATATTCAAGATGACCAACATTTGGTTAGCCCTatccattttttttccactaaCACGCTTTACTTTTTGTAAATTGATTGCTTTACATGTTAGCTGTGTATAAACAGACCTGTACAGCCCTTTCAGTAACTATTATAAGCTGTTGTAACTAAATGAAATGttgatttttataataaaattgaGTGAAATTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139038 lncRNA downstream 16435 12049609 ~ 12054955 (-) False AMCG00006621
TU138964 lncRNA downstream 169222 11899963 ~ 11902168 (-) True G110957
TU138948 lncRNA downstream 275048 11794536 ~ 11796342 (-) True G110942
TU138946 lncRNA downstream 277889 11790052 ~ 11793501 (-) True G110940
TU138945 lncRNA downstream 282156 11788940 ~ 11789234 (-) True G110939
TU139217 lncRNA upstream 629188 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA upstream 629188 12759571 ~ 12760836 (-) False G111158
TU139248 lncRNA upstream 824227 12954610 ~ 12959628 (-) True G111182
TU139505 lncRNA upstream 1873370 14003753 ~ 14004141 (-) True G111389
TU139544 lncRNA upstream 2005945 14136328 ~ 14137746 (-) True G111421
AMCG00006621 mRNA downstream 1730 12049494 ~ 12069660 (-) True AMCG00006621
AMCG00006618 mRNA downstream 46841 12017869 ~ 12024549 (-) True AMCG00006618
AMCG00006619 mRNA downstream 86575 11965268 ~ 11984815 (-) True AMCG00006619
AMCG00006615 mRNA downstream 140231 11907802 ~ 11931159 (-) True AMCG00006615
AMCG00006611 mRNA downstream 231664 11825901 ~ 11839726 (-) True AMCG00006611
AMCG00006625 mRNA upstream 6908 12137291 ~ 12140405 (-) False AMCG00006625
AMCG00006626 mRNA upstream 211364 12341747 ~ 12346094 (-) True AMCG00006626
AMCG00006627 mRNA upstream 220384 12350767 ~ 12354277 (-) True AMCG00006627
AMCG00006628 mRNA upstream 245525 12375908 ~ 12380970 (-) True AMCG00006628
AMCG00006633 mRNA upstream 256529 12386912 ~ 12392701 (-) True AMCG00006633
TU139024 other downstream 46842 12017882 ~ 12024548 (-) False AMCG00006618
TU138641 other downstream 1964105 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 2519310 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 3072126 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 3277328 8787818 ~ 8794062 (-) True G110520
TU139089 other upstream 6799 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 745909 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 745909 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 1325049 13455432 ~ 13503228 (-) True AMCG00006663
TU139625 other upstream 2229845 14360228 ~ 14364422 (-) True G111489

Expression Profile