RNA id: AMCG00006624


Basic Information

Item Value
RNA id AMCG00006624
length 1884
RNA type mRNA
GC content 0.54
exon number 20
gene id AMCG00006624
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12145745 ~ 12323278 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGAGGCAACGCAGGGTACCAGGAAGCTGCAGAGCACAATGGATGTGTGCGCCAAGTACTTTGAAGAAGGGATGCTGCATCACTTCTTCCGCACCTTGTTCACCAGCCCCAAGGTGCCTTTCGGGATGGATTTTTCTCCAAAAGCTGCAGATGATTCAAAACAAGAAGGAGATGCACAAACCTCACAGCATGGCCTCCTTGTGCCAGCGGTGAAGAAACTCAAGGACGGCTTCTTCCTGCTGCCAATTAACCCTGCCAGGCCCCATGTGTGTATTCGTCTGTCGGTCGAATTGCACCTCCTTCCACATTATGCTAAGAAGgtgcagcacagcactgctACCAGAGCAGGCTGGCGGGGGAGCGAGGGTTCCTCAGCCATTTTCAACAAAGATGAGCCCCAGGGCCTGCCCAGAGCCCAGCGGGAGGTGGCTGCCGGTGCGAAACTTTCAGCCTCCATGCCAGTTCCTTGTCAGGTTGTAGGCCAAGCATCTGGAGGTGCCATCGCACAGCGCAGGCAGGGAAAACACATCTGTGGAGAAGGTCCTGTTTCAGCAGACAGGGTGCTGGCCTGGGTCTGCTCCGCCCCCACTGGCCGGTCCTCCAGGAGTCCCGCGAGCTGCTTCTGCGCACAGGCCAGGAAGAGCTCCAGGCTGGCTAGGTTCCTTTGTCTGACAACACAACTGGCCCGGTGGCAGGGAGCCGAGGGGTACTTGGTTCTGTACTGCGGAGAACTGTGGTTAAGGGCCTCCTGGATGGCTTGTGCCACCATCTCCCTGTCTTTGCGTCGCTCCTCCTCCCAGACACCCTTGTCTGTGGCATGTTTCTCCTCCAGCCTCTGCTGCTCGAGCCGCACAGCTTCCAAAACAGCCTCTTTCACGCGTTCCTTCTCGGCCTACAAGAAACATAACATCCTTCTGAAcatgcATTATGGTCTACCTGTTAAATTCCAAAATATTATCTGTTCAACAAAGAGAGACATCCCTAACCGGCTAAACACCACCGTGTTCGGGAAACACATCGCACAGCTGTTTCACATTTTAGGAAAATTCACCAAAGGAAAATCTCTGACTATACTGTTCTTCTATCCTGGCTTGCTTTTCCATCAGCTCCTCAAGATCCTTCAATGGCCGTCAGCTTCACCTGTAAACCGGACAGCGTTTTCTGCAGCTGAGCCTGAGTTTCCTGTGCTGCTGATGAAAGGCTCACCTCCTGAGAAGCAACAGGGGCTTCTGCAGCTGCAGCCAAGGATCTCAAGATGCTGGTGTCATGGCATGCGATCAGCTGGACCAACTGCCACTCTGGCCTGCTGTGCATCTCACAGGAAAGTGTTGAAGCTCAGTTTTGAGCTGCAGATTCGTGCCCCTCACCTGTGGAATTCCACCCAAGCAGATGTCACTCCAGTTGAACGTCTACACGGGCATCTGAGGCTGATCGATTCCTGGCATTCCAAGGCTGGTTTCCCAATCACTGAATCTGATGAAGCACTGCTGTTTCCAATAGTGTGCAAGGGTATCCACGGAGGTAGAGTGGAGCCCCTGAAGAGGAAAACCACTTCCCTTCACCTTCACCCGTTTCTAGGTCCTCCATCGATGGCAGTGGCACAGTCCATCATCCATCATAGGGGGTCCCCAGCACAGTTGTTGGGGTTACAGGCATGGGGGACCCTTTCCACTTGtaacacagacactgaagtCTCCCACAGCTGCCGCCTCCAGGCAGACGAGTGGCAGTGCCAGGATGTTTTGCTCAAGGAGATTGTTTCAGCAGTGGAGTTTTGCAGTGTTTCTGCTCTGCTCTCCCGTCCCTCACTATGGGAGACCTCTGGATGCCCTGACCAACAGAATTTTCTCAGCGGAGAAATGTTTGAACGAAGCTTATGA

Function

GO:

id name namespace
GO:0032330 regulation of chondrocyte differentiation biological_process
GO:0030282 bone mineralization biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139023 lncRNA upstream 121196 12022810 ~ 12024549 (+) True G111008
TU138936 lncRNA upstream 352210 11793168 ~ 11793535 (+) True G110930
TU138920 lncRNA upstream 473297 11671569 ~ 11672448 (+) True G110916
TU138877 lncRNA upstream 795628 11349884 ~ 11350117 (+) True G110883
TU138835 lncRNA upstream 1025010 11120390 ~ 11120735 (+) True G110849
TU139099 lncRNA downstream 27479 12350757 ~ 12353363 (+) True G111063
TU139186 lncRNA downstream 297431 12620709 ~ 12629968 (+) True AMCG00006636
TU139201 lncRNA downstream 436293 12759571 ~ 12760841 (+) True G111148
TU139202 lncRNA downstream 436293 12759571 ~ 12760841 (+) False G111148
TU139203 lncRNA downstream 436293 12759571 ~ 12770925 (+) False G111148
AMCG00006616 mRNA upstream 91718 12031655 ~ 12054027 (+) True AMCG00006616
AMCG00006620 mRNA upstream 131424 12013086 ~ 12014321 (+) True AMCG00006620
AMCG00006617 mRNA upstream 144826 11987460 ~ 12000919 (+) True AMCG00006617
AMCG00006614 mRNA upstream 243699 11883937 ~ 11902046 (+) True AMCG00006614
AMCG00006608 mRNA upstream 355566 11773986 ~ 11790179 (+) True AMCG00006608
AMCG00006629 mRNA downstream 3557 12326835 ~ 12328153 (+) True AMCG00006629
AMCG00006630 mRNA downstream 9056 12332334 ~ 12333254 (+) True AMCG00006630
AMCG00006623 mRNA downstream 32775 12356053 ~ 12374775 (+) True AMCG00006623
AMCG00006631 mRNA downstream 58049 12381327 ~ 12387504 (+) True AMCG00006631
AMCG00006632 mRNA downstream 101928 12425206 ~ 12431044 (+) True AMCG00006632
TU138516 other upstream 2578394 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 3421679 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 3968959 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 4490551 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 5233491 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 687906 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 8614219 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 8725058 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 8819587 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 11708835 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile