RNA id: AMCG00006630



Basic Information


Item Value
RNA id AMCG00006630
length 921
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00006630
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12332334 ~ 12333254 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGACCACCGCCAACAATTACGGGCTCATATTTGCCTGCACATGCGGAGTGATCTTGGGGATTGGCTTCTGTGCCAACCTGCTGGTGTTCTCGCTGTTTGCCAAGTACAACACCCTACGCAAGAACCGCCTGGACATCCTGCTGCTCAGCATGGCGCTGGCGGACTTCCTCACGCTGCTCCTCATCCCCTTCACCCTGCACTCCGCCATCAGCCACAACTGGCCGATGAGCGACGCCTTCTGCAAGGTCTACCAGTTCTTCCTAGCTTTCTCCCTGGCCGCCAGCACGTATTCCCTTTGCGCCGTCTCTGTAACCAGGGCGATGATCATCACCAACCCACACCGGCCGCCCGAGATGGACCTGGTCATCTTTATGTTCATCCTGGTCTGGGCACTGAGCTTCTTCATCAGTTTCCCTTTGCGGATTTTTGCCACCAAAGAGACGGGAACTGTGGAGAACTTCACCTTTTGCCTGCCCACCATTCACGAGCACCACTACCAGGTGGTCATGGGCCAGTTTGTGCTTTACTACTTCATCCCCATGCTGGTGATTGCCTTCAACTACATCCGCTTGGCCCTCTTCCTCCACAAGAGCCCCATGATGTCCATGGCAAGTGCCAGGAACACCCGTCGAGCCTCCATCATGGTGTTCATGGCGGCCGCCACCTTCTCAGTGTGTTGGCTTCCTGGCTACATGCTGGAGCTGTGCGTCTACCTGGGGCTGTACCGCCACGGCAAGTCCTGGGAGATGTTCTACTTCATCTGCACGGTGCTCCAGTACCTCCACCCTTGCGTCAACCCCGTACTTTATGTGCTTCTGTCCAAGAGGTACCGGCACAAAAGGGGTGGGTGTCTGCTCAACTGCAACCGAAACAAAGTGCATCCGCAGGTCATCAGTGTGACGGAAAGCTTTCGCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU139091 lncRNA upstream 144566 12186608 ~ 12187768 (+) False AMCG00006624
TU139023 lncRNA upstream 307785 12022810 ~ 12024549 (+) True G111008
TU138936 lncRNA upstream 538799 11793168 ~ 11793535 (+) True G110930
TU138920 lncRNA upstream 659886 11671569 ~ 11672448 (+) True G110916
TU138877 lncRNA upstream 982217 11349884 ~ 11350117 (+) True G110883
TU139099 lncRNA downstream 17503 12350757 ~ 12353363 (+) True G111063
TU139186 lncRNA downstream 287455 12620709 ~ 12629968 (+) True AMCG00006636
TU139201 lncRNA downstream 426317 12759571 ~ 12760841 (+) True G111148
TU139202 lncRNA downstream 426317 12759571 ~ 12760841 (+) False G111148
TU139203 lncRNA downstream 426317 12759571 ~ 12770925 (+) False G111148
AMCG00006629 mRNA upstream 4181 12326835 ~ 12328153 (+) True AMCG00006629
AMCG00006624 mRNA upstream 9056 12145745 ~ 12323278 (+) True AMCG00006624
AMCG00006616 mRNA upstream 278307 12031655 ~ 12054027 (+) True AMCG00006616
AMCG00006620 mRNA upstream 318013 12013086 ~ 12014321 (+) True AMCG00006620
AMCG00006617 mRNA upstream 331415 11987460 ~ 12000919 (+) True AMCG00006617
AMCG00006623 mRNA downstream 22799 12356053 ~ 12374775 (+) True AMCG00006623
AMCG00006631 mRNA downstream 48073 12381327 ~ 12387504 (+) True AMCG00006631
AMCG00006632 mRNA downstream 91952 12425206 ~ 12431044 (+) True AMCG00006632
AMCG00006635 mRNA downstream 197086 12530340 ~ 12540008 (+) True AMCG00006635
AMCG00006639 mRNA downstream 284263 12617517 ~ 12618947 (+) True AMCG00006639
TU138516 other upstream 2764983 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 3608268 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 4155548 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 4677140 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 5420080 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 677930 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 8604243 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 8715082 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 8809611 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 11698859 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile