RNA id: AMCG00006631


Basic Information

Item Value
RNA id AMCG00006631
length 2691
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00006631
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12381327 ~ 12387504 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGCTGTCACTGGGGTGTTCTCAAATTAGTTTCTTCTTCAACAGGACTGAGGTTATGGGTTTTAGGTTATAAAACTGAGAACTGttgtaaaatattacacataataataaacgACTACAAATTCTTTATATCCTAAGGATGAGACATCGCCTTAATACCGACTCAACACTGCTCCCTGCGACACACTGAGGCATGAAGCTGCGAGTGAGACTGAACAAACAGTCCAGCCGCCTGGAGCTGGAGGGGGACCAGCCCTCACTGACGGAGCTGGCCATCCAAGTGAAGGAAATCATATTGCCCTCCTATGGATACAGCCCAGACACCGAGTTCACCCTCTCCCTCAATGGTAAAGAGCCCCTCGTTGACTCTGGGCAGACCCTGGCATCGTGCGGCATCGTGTCGGGGGACTTGGTGTGTGTGATCCTGTCACAGGACCCTCCGATTCCCAGCCCCGCTCCAGTCGGGAGCTCCAGTGGTCCGGTGGTGGGGAAGCAGCATGGGGAGAAGAGCACCTCTGGTTCCCCAGGAGCCCAGCAGGTGTCTACAGAAGGCCCCCATGACAGTCAGACGGGAACGAGGGCAGAGGAAGCCCAGCGGGAGGCCGAGGCAGGGTCCTTCATTCCCGAACCCATGCTCTGCAGTGAGGCCGAGGACGGGAAGGTGCCTCACTCTCTGGAGATGCTTTTCCATGGGGCTCAGTGCAGCAGCCCCAGCGACGCACTGATGGAGGCCGTGCATCTGATTATGCTGGAGACAGGATACGTGTCGCAGTGCCCTGATGTGAGAGCTGGGGAGATGCCTGCTGGGTGGAGGGCTGCCGGAGGGCTTTACAGGCTGCACTACACACACCCCTTctgtgaccacagcctggccatgcTAGTGGCTGTACTGATGGGAGACACACTTGTCATCAATGCCACTCTGAAGATAAATGAAGTAGTTGACAACGTGAGGAAAATCCAGCTTAAGCCCTCTTCCTATGTGACAGATTCATGGTGTGGGGAAAGTCCTGCAGATGTGTACAAGGACCTGAAGAAGCTATCCCGTATTTTCAAGGATCAGCTTGTTTACCCTCTGATTGCATCAGCCAGACAAGCCATGAACCTCCCAGCAGTGTTTGGGCTCACAGTGCTCCCTCCCGAGCTGCTGCTTCGTGTCTTGCGTCTCCTGGACATGCGGTCCGTGGTGACCCTGTCGGCTGTGAGCAGAGACCTCCACACAGCGACCGCCGATCCCACTCTGTGGAGGTTCCTGTACCAGCGCGATTTCAGAGATTCAACCAGCAGACCAAGAGAAACTGACTGGAAGGAACTCTACAAAAGGAGACGCCAGAGGGAAGCAACCCGTGTGCGCCGCACTGTCGTTTACCCACCAGTCCCCTCCCACCCATTTCCATTCCAGCCTCTGCCATTTCACCCCTTTCCCTTTGGTCCCAACCCGCCCTACCCCCCGGGCATCATCGGGGGAGAGTATGACCAGAGGCCGGGGCTGCCCTCTCTCATGCCCCGGCCACGTTTTGATCCCCTCGGGCCACAGCCAGGGCAAGACCCGCTGACTGGTGGCTCTGTCGGTCGACGGTCCCTGAGACCTTCGGGCAGCCGCTCATCGGACATCCGCCGAGGGTTTATTTGAATCTTTGTTCGAGGCTTTCTTCTGCTTGCAGACCAGCGGTGGAGCACCTCAGTTGGTCCAGGCTTTTCCACAGAACTTAACAGATGGTCAGGACCAACTGTGAATGctttacttacttattttaaGCAGCTGgtttatgtgattttttttttgcagtccaTTTCTATTAAGAACATTTGGGACAGATTATGCAACAGCTTATAAGCAGAAAGAACataagcaataaaaaagtcaaTGGTAATTTGTCAACACACTGAAGGGTGTGAACCCAGCCAAGCAATGTCTTCCTTTCTGCTACGAGGTGACCTTCTTGTGGTGTAGTGATCGATGTGGTACAGAGATAAGAGAGTCTCGGTTCTCTATTTACAGCTGACGGCACAGGATGAGCATGACTTTGTGAAGTACTTGGATATGCTCATTATCACCAGGCActtaactaactaaataaaaactgattcaTCAGCTGTCATCTCATAATGtggtttgctttctgtttttctttagtgtGGATTCATTTAAAAGGTTCTGAATCTGATCCAAGAGCATTAGGAGCCATTTAACTAAACCATTCTCAACTTTTTAGAAGCACAGGATGATTGTAGTTCACACCACTAAAACAATGCCTGTATTTAGAATAGGAGAACTAATGACAGCTGCGACATGACACACCACTGACATTCACACTTTACTCCCCACAACACTAGAGATGGACAACTGACTGCATTTACAGTCCTGCCATGACTTCTCATTTGCATACATCATTGTATCATCTGGCTATGATCTGTATTCTGCAGCCTGACACATCCGAGTAGAAGGGCAGCTTGTATGTTACAGCACCTCAGGATTTGTAGCCATCCTTCCTTTTGCAAGCAAAGGTGAGGAagaattgtgtgtatgttttggaGTAAAGCACCACATAGTGTAGGATTTTAATACATCAAACAAGTATTtatctgcaaaacaacaaacccattttaaaatcacaaaaacatgcATGAGAGACACACCATTTCAAAATGGCAGCTATCATTGGTGCAGGGGCCGTGTATCTCCAGCAG

Function

GO: NA

KEGG:

id description
K10293 FBXO7; F-box protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139099 lncRNA upstream 27964 12350757 ~ 12353363 (+) True G111063
TU139091 lncRNA upstream 193559 12186608 ~ 12187768 (+) False AMCG00006624
TU139023 lncRNA upstream 356778 12022810 ~ 12024549 (+) True G111008
TU138936 lncRNA upstream 587792 11793168 ~ 11793535 (+) True G110930
TU138920 lncRNA upstream 708879 11671569 ~ 11672448 (+) True G110916
TU139186 lncRNA downstream 233205 12620709 ~ 12629968 (+) True AMCG00006636
TU139201 lncRNA downstream 372067 12759571 ~ 12760841 (+) True G111148
TU139202 lncRNA downstream 372067 12759571 ~ 12760841 (+) False G111148
TU139203 lncRNA downstream 372067 12759571 ~ 12770925 (+) False G111148
TU139223 lncRNA downstream 458419 12845923 ~ 12847502 (+) True G111161
AMCG00006623 mRNA upstream 6552 12356053 ~ 12374775 (+) True AMCG00006623
AMCG00006630 mRNA upstream 48073 12332334 ~ 12333254 (+) True AMCG00006630
AMCG00006629 mRNA upstream 53174 12326835 ~ 12328153 (+) True AMCG00006629
AMCG00006624 mRNA upstream 58049 12145745 ~ 12323278 (+) True AMCG00006624
AMCG00006616 mRNA upstream 327300 12031655 ~ 12054027 (+) True AMCG00006616
AMCG00006632 mRNA downstream 37702 12425206 ~ 12431044 (+) True AMCG00006632
AMCG00006635 mRNA downstream 142836 12530340 ~ 12540008 (+) True AMCG00006635
AMCG00006639 mRNA downstream 230013 12617517 ~ 12618947 (+) True AMCG00006639
AMCG00006636 mRNA downstream 232558 12620062 ~ 12651815 (+) False AMCG00006636
AMCG00006638 mRNA downstream 264435 12651939 ~ 12653420 (+) True AMCG00006638
TU138516 other upstream 2813976 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 3657261 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 4204541 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 4726133 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 5469073 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 623680 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 8549993 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 8660832 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 8755361 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 11644609 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile