RNA id: AMCG00006633


Basic Information

Item Value
RNA id AMCG00006633
length 3381
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00006633
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12386912 ~ 12392701 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGagcaacagatttatttatttttttagggtTGGATGCGGTGCAGTTGACACGTGATTTTTGGTTAATTGTACTAGTTTTTTTCCtcgtttttaattattaatctgtgcgatatttttaaatatacatgcgTATTCGTCTTCTCTAAGGTTGGGCGTTATTTGATCTGTTACCATGATGCTcagttgtgtgtttgcttgttttctgcAGCTGGGGATGTCAGCAAAAACATTCAAAGTTAAGCCAGTAATGGTGTCTCCCAAGCTGACCTGGTTAAACCCCACACAAAACACAGTATCTCTGCAAAAGCCCTTTTGTGTCTTTGACAGTCTGAAACCAAccagtaaaatgaaaattgatgTCTATGTTATCCAGAGTTTGGCAGCTACCAATACCTTTGATACtgggaaaacatacaaagagACGAACGGAGGGAAGGAGATTCCATACAAGGCTACATCTTTCAATGTCCCCAACTGTACTTCTCTCCCAAAACCGGCAGACCTGTCCACCCGCACCAAGGTTGATAAGATTTTAGACCAGTACTTGGTCCAAATTGGAAACGACTCGAACTGTGCAAGAGAGCTAGTGGAAAAGAAAGATTGTAATGGGCCGCTTTCTGTGGACTCCGCATACAGgtttaaatatttgctttttgaCGGAAATGCAACCATAGCAGACACTGAATGGTCAGAGCCAGTGCAAACGGGAAAAGgTCTCAACCCTGATGAAATTGACACGTGGATTGGATACCGAAGTGGAGGTGGGATTGTTGTCACCGTCACTACGagtgtcctgctgttttttctgCTCGTTCTTGCCATTGCCATGGGGGTATTTGAGTCGATCTTCCATGAGAAAATGATAAATGCCACGAGTAGATCACATCTTTCTTCTGCTGTGAAGAAGCGGGggtcagtggaggagactaacATCATGACCTAGAGGTGGGAATGCTCTTTTCTGCTTATGAAgagtgttctgttttttttgggtATTTGACCTTGTGTATGTACAGATGGAGAtatgtcatttgtttatttttattaatcattCATGAATGCCTCGGTTTTGTGAATAAATTAAGTGGGAGGAACCATTTGTCAAGCCATATTGCAAACGTAGCTGAACCTTTCTATGGATGACTAGCAGTTTGGTAATGTTGGCTGGTCATGGAACTTCATCCTGGTAAGTTTAACCCTTAGAAATCCAGTCTGACCGAAATGTCAATTACAGTGGTCTGTAAAATTGGGATAATATATCCTTGCAATGTATGTGACAATATACTTCACACTGGGTTCCTAAGATTTAAGTTTGACTTCAAGTGGAGTAGTTCTGAATCAATATAAGATTTTGAATATTAAGTGGTAGTTCAAATGGTAGAAAGTATGCCCCCACATGGGCAGTGGATGCTTGCTGATCCCTCTATTGACTTGAAAAACAGTGTTCCTGGTGATGAAGTGATCCTGCTTATGCTGATCTTGGGGTTTAAAATAGTTCTGCGGTGGAGGCTTTGGTTGTCTTCACACCCCACCAATTTCTAGATCCTAGCACTTCTTCACAATAGGGGAAAAAATGGTCTCCATCTGAGGTGACTTGAATATCAACCTACGGATCGTATACCATCAGTTCACAAGACCGAAGCCTTGAGTGACCAAGTCTGCTGCTATGGTAAAATAGCACATGATAAAATGTCTGACCTGAGACTTCTGTATAACTAGTGTTGTACTTCTGATTTATAGTCTGTGAGGTTTAATACCTATGAGAGTGAGGAAGGGAAAGGTGTTGAAGCTGCtgtttgattttgatttcatttaagTGGGTAATTGTTTGAATCATTGCTgaacttcttcttcttcaatgtTCATCTTTATAAACCACTGCCTTGTTTCATGGCACCCTTATTGTCATCAAAGTCTTCAACTAGACACTCATTGCAAAATACCCTTGATTTactgtggtttttttttgttttttttttttgggggggggatttgTATTGCACTATTGATATTGGTTCAGTTACtttcttttgtaattaaatggtGGCCATTGCTCAGTACTAAGTCTGAAATGTATTACTGAGTGAAACCTGCCTGTGCCCTTGTGTTCCAAATGTTAAGCTTGCATCTGCATGCAGGTTCTGAGCTACTAAGAATACTGATGAACTATTGTAATCCATTGTCCAATGAGTTCcaacagtttttcattttcttacatCAAGTTCTAAAACCATGTAAAGCATACACAATGAATAGATTTACTGGACTTTGGTCTTAACACAAATTGGTTTAATAAACCCTCTGTTATATAGCAGCATGTATTAGGGgatattttccagaaaaaatTCTCTTAAGAACAAAGGAGATTGCAGTTCTGCTTTTGTGACCACAATCTCAAAAGCAGACCTGTTTCTTGTGTAAGTGAATCACATACACTCAGCCTGCTCTAAAAGCAGTGAATGATCATTTCGGTAACTGTGAGCAGGTTTTAAGACCATGACACATCATTGGACTTGCAAAAGATGAATGTCCACTGCTAAACTAGCTTTACACAAGCAACTGTCTGGAATCCTTTGAGCGGCATAACGTTTACATGAACGAGCTGAACCTGGACAGTTCTGAAATTCAAAAGATGACCTTCTCAAATATAGCAGCATACAGCACCttggcttttgttgttttttttactttctgtaaTGTCCCTGTAATCTTGGTTTGCTTGCATTtgctaaagtttttttttttttttttctattaggCTGTTGTCTCACGCAGCACTCTTGGAGCTGCTGGAGATACACGGCCCCTGCACCAATGATAGCTGCCATTTTGAAATGGTGTGTCTCTCATgcatgtttttgtgattttaaaatgggtttgttgttttgcagataAATACTTGTTTGATGTATTAAAATCCTACACTATGTGGTGCTTTACtccaaaacatacacacaattctTCCTCACCTTTGCTTGCAAAAGGAAGGATGGCTACAAATCCTGAGGTGCTGTAACATACAAGCTGCCCTTCTACTCGGATGTGTCAGGCTGCAGAATACAGATCATAGCCAGATGATACAATGATGTATGCAAATGAGAAGTCATGGCAGGACTGTAAATGCAGTCAGTTGTCCATCTCTAGTGTTGTGGGGAGTAAAGTGTGAATGTCAGTGGTGTGTCATGTCGCAGCTGTCATTAGTTCTCCTATTCTAAATACAGGCATTGTTTTAGTGGTGTGAACTACAATCATCCTGTGCTTCTAAAAAGTTGAGAATGGTTTAGTTAAATGGCTCCTAATGCTCTTGGATCAGATTCAGAACCTTTTAAATGAATCCacactaaagaaaaacagaaagcaaaccaCATTATGAGATGAC

Function

GO: NA

KEGG:

id description
K19520 UPK3A, UPIII; uroplakin-3a

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139067 lncRNA downstream 256529 12071390 ~ 12130383 (-) False AMCG00006622
TU139038 lncRNA downstream 331957 12049609 ~ 12054955 (-) False AMCG00006621
TU138964 lncRNA downstream 484744 11899963 ~ 11902168 (-) True G110957
TU138948 lncRNA downstream 590570 11794536 ~ 11796342 (-) True G110942
TU138946 lncRNA downstream 593411 11790052 ~ 11793501 (-) True G110940
TU139217 lncRNA upstream 366870 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA upstream 366870 12759571 ~ 12760836 (-) False G111158
TU139248 lncRNA upstream 561909 12954610 ~ 12959628 (-) True G111182
TU139505 lncRNA upstream 1611052 14003753 ~ 14004141 (-) True G111389
TU139544 lncRNA upstream 1743627 14136328 ~ 14137746 (-) True G111421
AMCG00006628 mRNA downstream 5942 12375908 ~ 12380970 (-) True AMCG00006628
AMCG00006627 mRNA downstream 32635 12350767 ~ 12354277 (-) True AMCG00006627
AMCG00006626 mRNA downstream 40818 12341747 ~ 12346094 (-) True AMCG00006626
AMCG00006625 mRNA downstream 246507 12137291 ~ 12140405 (-) False AMCG00006625
AMCG00006622 mRNA downstream 264113 12071403 ~ 12122799 (-) True AMCG00006622
AMCG00006634 mRNA upstream 40322 12433023 ~ 12444850 (-) True AMCG00006634
AMCG00006637 mRNA upstream 155094 12547795 ~ 12561436 (-) True AMCG00006637
AMCG00006642 mRNA upstream 373311 12766012 ~ 12801901 (-) True AMCG00006642
AMCG00006644 mRNA upstream 456306 12849007 ~ 12851784 (-) True AMCG00006644
AMCG00006643 mRNA upstream 466476 12859177 ~ 12872555 (-) True AMCG00006643
TU139089 other downstream 246519 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 362364 12017882 ~ 12024548 (-) False AMCG00006618
TU138641 other downstream 2279627 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 2834832 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 3387648 8997637 ~ 8999264 (-) True G110570
TU139243 other upstream 483591 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 483591 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 1062731 13455432 ~ 13503228 (-) True AMCG00006663
TU139625 other upstream 1967527 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 2332950 14725651 ~ 14753970 (-) False G111621

Expression Profile