RNA id: AMCG00006638



Basic Information


Item Value
RNA id AMCG00006638
length 1482
RNA type mRNA
GC content 0.50
exon number 1
gene id AMCG00006638
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12651939 ~ 12653420 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACAGTTGTGGCAGGAGATAACATGGATGAGACCTCTGCTTTGCCCGGGCACCCTCAAGATAGCTACCCACCCGACCACGATGACCACGAATGCTGCGAGAGGGTGGTCATCAATATAGCCGGGCTGCGCTTTGAGACTCAATTAAAAACACTCGCCCAGTTTCCCAACACATTGCTGGGTAACCCCAAGAAGAGGATGCGGTACTTTGATCCCTTGAGAAATGAGTATTTCTTCGACAGAAACCGTCCCAGTTTCGACGCCATCCTCTATTACTACCAATCGGGAGGCCGGTTGAGGAGACCGGTTAATGTACCTTTGGATATGTTTTCGGAAGAGATCAAGTTTTATGAGCTCGGGGAGGAGGCAATGGAGAAATTTCGTGAGGATGAGGGTTTCATCAGGGAGGAAGAGCGCCCTTTGCCCGAGAAGGAATTTCAACGCCAAATCTGGCTCTTGTTTGAGCACCCGGAGAGCTCTGGACCAGCCAGGGGGATTGCTATTGTGTCTGTCATGGTGATCCTGATTTCgattgtgatattttgtttgGAGACTTTACCAGAACTTAAAGACGACCCTGCAGGGAGGATACACATTGTTGGGAATAGCACCTACTATATCAAACCAAATATCTTCACCGACCCTTTCTTCATTGTGGAGACGCTCTGCATCATCTGGTTCTCCTTTGAGCTGGTAGTTCGTTTTTTCGCCTGTCCCAGCAAAGCAGACTTCTTTAAGAACATTATGAACTTTATTGATATCGTGGCCATCATCCCCTATTTCATCACCCTGGGCACCGAGATGGCAGAAGAGCAAGATGGCAAAGGCGAGCAGAAAGGCGAGCAGGCGACGTCTCTAGCAATCCTCAGGGTAATCCGTCTGGTCAGGGTTTTCAGGATCTTCAAGCTCTCCAGACACTCCAAGGGACTGCAGATCCTGGGGCAGACTCTCAAAGCCAGTATGCGGGAGCTGGGACTGttaattttcttccttttcatcGGTGTCATCTTGTTCTCCAGCGCGGTGTACTTTGCAGAAGCCGAGGAGAAGGAGTCCTACTTCTCCAGCATCCCAGATGCGTTCTGGTGGGCGGTGGTGTCTATGACAACTGTGGGGTATGGGGACATGTATCCTGTGACAATTGGGGGCAAAATCGTGGGGTCCTTGTGTGCCATTGCCGGAGTGCTAACGATTGCATTGCCCGTTCCTGTGATTGTCTCCAACTTTAATTACTTCTATCACAGGGAGACGGAAGGGGAAGAGCAGGCACAGTTGTTGCACGTCAGTAACCCCAACATCGCGTCTGAGACCAACTCCAGCCGCCGCAGCTCGTCAACTGTCAGCAAGTCAGAGTACATGGAAATCGATGAGGATATGAACAACAGCATAGACAATTTTAGAGAGGCAAACCTCAGAACTGGCAACTGCACCGTAGCCAACCAAAACTGTGTGAATAAAAGCAAGCTGCTAACTGATGTTTAG

Function


GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU139186 lncRNA upstream 21971 12620709 ~ 12629968 (+) True AMCG00006636
TU139099 lncRNA upstream 298576 12350757 ~ 12353363 (+) True G111063
TU139091 lncRNA upstream 464171 12186608 ~ 12187768 (+) False AMCG00006624
TU139023 lncRNA upstream 627390 12022810 ~ 12024549 (+) True G111008
TU138936 lncRNA upstream 858404 11793168 ~ 11793535 (+) True G110930
TU139201 lncRNA downstream 106151 12759571 ~ 12760841 (+) True G111148
TU139202 lncRNA downstream 106151 12759571 ~ 12760841 (+) False G111148
TU139203 lncRNA downstream 106151 12759571 ~ 12770925 (+) False G111148
TU139223 lncRNA downstream 192503 12845923 ~ 12847502 (+) True G111161
TU139325 lncRNA downstream 700536 13353956 ~ 13357071 (+) True G111240
AMCG00006636 mRNA upstream 124 12620062 ~ 12651815 (+) False AMCG00006636
AMCG00006639 mRNA upstream 32992 12617517 ~ 12618947 (+) True AMCG00006639
AMCG00006635 mRNA upstream 111931 12530340 ~ 12540008 (+) True AMCG00006635
AMCG00006632 mRNA upstream 220895 12425206 ~ 12431044 (+) True AMCG00006632
AMCG00006631 mRNA upstream 264435 12381327 ~ 12387504 (+) True AMCG00006631
AMCG00006640 mRNA downstream 61060 12714480 ~ 12716165 (+) True AMCG00006640
AMCG00006646 mRNA downstream 230356 12883776 ~ 12888236 (+) True AMCG00006646
AMCG00006645 mRNA downstream 284906 12938326 ~ 12954435 (+) True AMCG00006645
AMCG00006650 mRNA downstream 362233 13015653 ~ 13035434 (+) True AMCG00006650
AMCG00006653 mRNA downstream 383253 13036673 ~ 13037830 (+) True AMCG00006653
TU138516 other upstream 3084588 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 3927873 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 4475153 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 4996745 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 5739685 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 357764 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 8284077 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 8394916 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 8489445 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 11378693 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile