RNA id: AMCG00006639


Basic Information

Item Value
RNA id AMCG00006639
length 1431
RNA type mRNA
GC content 0.51
exon number 1
gene id AMCG00006639
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12617517 ~ 12618947 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGTGGTGCCCGGAGAAAACCTAGACGAGACTGTGGCACTGACAGCCCTGTCTCAAGATGTGTATGATCCAGACCAAGTGAACCAGGAATGCTGTGAAAGGGTGGTGGTCAACATCTCCGGGCTGCGCTTTGAGACCCAACTCAAAACCCTCGCCCAGTTCCCCAACACCTTATTGGGGGACCCCAGGAAAAGGATGCGCTTCTTTGATCCGCTGAGGAACGAATACTTCTTTGACAGGAATCGCCCTAGCTTTGATGCCATCCTGTATTATTACCAGTCCGGGGGGAGGCTCAGAAGACCCGTTAACGTACCTGTGGACATTTTCATGGAGGAGATTAAATTTTACGAATTGGGGGAGGACGTGATCGAGAATTTCAAGGAGGACGAGGGGTTCATTAAAGAGGAAGAGCGCCCTTTGCCGGACAACGAGTTCCAGCGCCAGGTCTGGCTTCTGTTCGAGTACCCGGAGAGTTCGGGCCCGGCTCGGGGGATCGCTATCGTCTCGGTCTTGGTTATTTTGATATCGATTGTCATCTTCTGCTTGGAGACCCTGCCAGAGTTCAGGGAAGAGAGTCGGTTTTATGATCACTCGGTTGTGAACGGGACTAGCCATATCAAGCCCAATCCGTTCACTGACCCGTTCTTCATCGTGGAGACGCTGTGCATCATCTGGTTCTCCTTTGAGTTGCTGGTGAGGTTCTTCGCCTGCCCGAGCAAGCCAGCgttctttaaaaatatcatGAACACCATCGACATTGTGGCCATTATTCCCTATTTCATCACCTTGGGGATGGAGCTGGCGGAGCACCAGGGCAATGGCCAGCAAGCCATGTCGTTGGCAATATTGAGGGTTATCCGTTTGGTGAGAGTCTTTCGGATTTTCAAGCTCTCCAGACACTCCAAAGGACTGCAGATCTTGGGGAAAACCCTGCAGGCTAGCATGAGGGAACTGGGGCTGTTGATATTCTTCCTGTTCATAGGTGTCATCTTGTTCTCCAGCGCGGTGTATTTCGCCGAGACGGACGACCCCTCCTCTGGCTTCTCCAGCATCCCAGATGCGTTCTGGTGGGCGGTGGTGTCTATGACTACTGTGGGGTATGGGGACATGTGTCCTGTCACAATTGGTGGCAAAATCGTCGGTTCACTCTGTGCCATTGCTGGTGTGCTGACAATCGCGCTACCTGTTCCTGTCATTGTCTCCAATTTTAACTATTTCTACCACAGGGAGACTGAGCATGAGGAGCAGTTTCAGTACACCCATGTAACATGCGGCCAGCAGCCATCCTCATTCGGGGAACTGAAGAGGAGTGAGAGCAAGCCTTCTCTCAGCAAGTCAGACTACCTGGAGGCAGATGATTTGGATGCAATCAAATATAGAAATTGTAGCCCCCATAAGGCATACACGGGAAAGCTTTCTGATGTATGA

Function

GO: NA

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139099 lncRNA upstream 264154 12350757 ~ 12353363 (+) True G111063
TU139091 lncRNA upstream 429749 12186608 ~ 12187768 (+) False AMCG00006624
TU139023 lncRNA upstream 592968 12022810 ~ 12024549 (+) True G111008
TU138936 lncRNA upstream 823982 11793168 ~ 11793535 (+) True G110930
TU138920 lncRNA upstream 945069 11671569 ~ 11672448 (+) True G110916
TU139186 lncRNA downstream 1762 12620709 ~ 12629968 (+) True AMCG00006636
TU139201 lncRNA downstream 140624 12759571 ~ 12760841 (+) True G111148
TU139202 lncRNA downstream 140624 12759571 ~ 12760841 (+) False G111148
TU139203 lncRNA downstream 140624 12759571 ~ 12770925 (+) False G111148
TU139223 lncRNA downstream 226976 12845923 ~ 12847502 (+) True G111161
AMCG00006635 mRNA upstream 77509 12530340 ~ 12540008 (+) True AMCG00006635
AMCG00006632 mRNA upstream 186473 12425206 ~ 12431044 (+) True AMCG00006632
AMCG00006631 mRNA upstream 230013 12381327 ~ 12387504 (+) True AMCG00006631
AMCG00006623 mRNA upstream 242742 12356053 ~ 12374775 (+) True AMCG00006623
AMCG00006630 mRNA upstream 284263 12332334 ~ 12333254 (+) True AMCG00006630
AMCG00006636 mRNA downstream 1115 12620062 ~ 12651815 (+) False AMCG00006636
AMCG00006638 mRNA downstream 32992 12651939 ~ 12653420 (+) True AMCG00006638
AMCG00006640 mRNA downstream 95533 12714480 ~ 12716165 (+) True AMCG00006640
AMCG00006646 mRNA downstream 264829 12883776 ~ 12888236 (+) True AMCG00006646
AMCG00006645 mRNA downstream 319379 12938326 ~ 12954435 (+) True AMCG00006645
TU138516 other upstream 3050166 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 3893451 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 4440731 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 4962323 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 5705263 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 392237 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 8318550 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 8429389 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 8523918 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 11413166 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile