RNA id: AMCG00006640


Basic Information

Item Value
RNA id AMCG00006640
length 1686
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00006640
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12714480 ~ 12716165 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGATAGCCTTGGTAAGTTTGGAAAACGGCGGGACTACGAACACAGGCAGCGGAGGCAGTACAACCGTGCTGAATCTCCCCCAAGAAGCCTTTGTGCAATCTGGACTCAACCAGGGCTACGGGAAAGAGCTCAACACTTTCAGCCGCCTGCAACAGGGCTCCTGGAAAATGAACGACATGAACAACACTTTCAGCAGCAGCGAGAATGCCATGGATGCGCTCCTGCGCGCTGATCACAGCCCTCATCTCTTTGACGAGGATGCGCTGGACATGGACCTGGACAACGAGAGCAGCGAGCGGGTCCTCATCAACATCGCAGGGCTGCGGTTCGAGACTCAGCTCGGCACCCTCAACCAGTTCCCCGACACTTTGCTCGGAGACCCAGATAAAAGGATCAAGTACTTCGACCCTCTGCGAAACGAGTATTTCTTCGACCGCAACCGACCCAGTTTTGATGGGatcctttatttttatcagtCCGGAGGGAAAATTAGGAGACCTGTCAATGTCTCCATAGACGTGTTTGCGGACGAGATTCGCTTTTACGAACTGGGGGAAGAGGCGATGGAAAGGTTCCGCGAAGACGAGGGCTTTATCAAAGAGGAGGAGAAGCCTCTGCCCACGAATGACTTCCAGAAGCAGGTATGGCTCATTTTCGAGTACCCGGAGAGCTCCAGCCCTGCCCGGGGTATCGCTATCGTTTCTGTCCTCGTCATCCTCATATCCATCATCACCTTTTGTCTGGAAACCCTGCCGGAGTTCAGGGACGAGAGCGAGCTGCCCCACTCCAGAAAGAACAACGCCACCCAGGAGTCGCCCTCCAACACGCTCTCAGACCCCTTCTTCATCATAGAGACTACCTGTGTGATCTGGTTCACTTTTGAACTCATAGTGCGCTTCTTTGCGTGTCCGAGCAAGTCTGTGTTTTCCAAAAACATCATGAATATAATAGACATTGTTGCTATCTTCCCCTACTTCATCACTCTGGGCACAGAACTGGCGGAGCAACAGGGCAACAATAACGGGCAGCAGGCCATGTCTCTGGCCATACTGAGGGTCATTCGCCTGGTGCGGGTCTTCAGGATATTCAAGCTGTCCAGACACTCCAAAGGGCTGCAGATTCTGGGGCAGACCCTGAAGGCCAGCATGAGAGAGCTCGGGCTTTTAATCTTTTTCCTCTTCATCGGGGTCATCCTGTTCTCCAGCGCGGTTTACTTCGCAGAGGCAGACGAGCCCGAGTCTCATTTCTCCAGCATCCCCGACGCCTTCTGGTGGGCTGTGGTCACGATGACCACGGTGGGCTACGGGGACATGCGGCCCATCACAGTCGGAGGGAAGATAGTGGGCTCCCTGTGCGCCATCGCCGGCGTCTTGACCATTGCCTTGCCGGTGCCCGTCATTGTGTCCAACTTCAATTATTTCTACCACCGGGAGACGGACCAGGAAGAGCAGACCTCCCTGAAAGATGAACCCAGCAGTGGCCACACGACCCCCTGCAACGAGCTGAAGAGGAGCCGCAGTCGGACATCGCTCAACAAGTCCACGGGCAACCTGGACAACAACGAGGAGGCCAGTGTGGGCCGGCCTGTGGAGAAGGCTAATCTAAAGGCCAACAGTAACATGGATATTAAAAGATCCCTGTACGCCCTTTGTTTAGATACaagcagagagacagacttGTAA

Function

GO: NA

KEGG:

id description
K04878 KCNA5, KV1.5; potassium voltage-gated channel Shaker-related subfamily A member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139186 lncRNA upstream 84512 12620709 ~ 12629968 (+) True AMCG00006636
TU139099 lncRNA upstream 361117 12350757 ~ 12353363 (+) True G111063
TU139091 lncRNA upstream 526712 12186608 ~ 12187768 (+) False AMCG00006624
TU139023 lncRNA upstream 689931 12022810 ~ 12024549 (+) True G111008
TU138936 lncRNA upstream 920945 11793168 ~ 11793535 (+) True G110930
TU139201 lncRNA downstream 43406 12759571 ~ 12760841 (+) True G111148
TU139202 lncRNA downstream 43406 12759571 ~ 12760841 (+) False G111148
TU139203 lncRNA downstream 43406 12759571 ~ 12770925 (+) False G111148
TU139223 lncRNA downstream 129758 12845923 ~ 12847502 (+) True G111161
TU139325 lncRNA downstream 637791 13353956 ~ 13357071 (+) True G111240
AMCG00006638 mRNA upstream 61060 12651939 ~ 12653420 (+) True AMCG00006638
AMCG00006636 mRNA upstream 62665 12620062 ~ 12651815 (+) False AMCG00006636
AMCG00006639 mRNA upstream 95533 12617517 ~ 12618947 (+) True AMCG00006639
AMCG00006635 mRNA upstream 174472 12530340 ~ 12540008 (+) True AMCG00006635
AMCG00006632 mRNA upstream 283436 12425206 ~ 12431044 (+) True AMCG00006632
AMCG00006646 mRNA downstream 167611 12883776 ~ 12888236 (+) True AMCG00006646
AMCG00006645 mRNA downstream 222161 12938326 ~ 12954435 (+) True AMCG00006645
AMCG00006650 mRNA downstream 299488 13015653 ~ 13035434 (+) True AMCG00006650
AMCG00006653 mRNA downstream 320508 13036673 ~ 13037830 (+) True AMCG00006653
AMCG00006659 mRNA downstream 556332 13272497 ~ 13283101 (+) True AMCG00006659
TU138516 other upstream 3147129 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 3990414 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 4537694 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 5059286 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 5802226 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 295019 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 8221332 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 8332171 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 8426700 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 11315948 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile