RNA id: TU139243


Basic Information

Item Value
RNA id TU139243
length 1542
RNA type TUCP
GC content 0.41
exon number 3
gene id AMCG00006641
representative False

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12876292 ~ 12878656 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCGACCGTATTTAGCGATGAACACAAGACTGCCTGCATGCTGAATTAAAGGAGGAAAAGCCAGAGATGTCCACCCTGTCTAACTATGCCATGCGGATGGCGCGCCTCAGTGCCCGTATCTTCGGTGATGTGGCGCGACCCACTGACAGCAGCTCCATGAAGGTGGTGGAGCTGTTCAAGGACCAGCCCATGGCTCTCAAGAAGGAGGTTTACGACTGGTATCCACAGCACAAGGTCTATTACGCCTTGACCAAGAAGCTGCGGTTCATGGGCCTCTTCAGGGATGAACATGAGGATTTTAAGGAGGAAATGCGTCGTCTGAGAAAGCTCCGTGGGAAGGGGAAACCAAAGAAAGGAGAAGGAAAGCGAGCcatgaagaataaataattgGGCTCGGATAAACAAGTGGTTTACCCAAGCCTTGGGCTGGAATGCACAGAGGAAGGGGTGTCTAGACTGAAAGGATGACATTAATGAGACATTACATTCTGTGGGAAAGAAAGGACTTCCATTTTCAGAGTACTGCAGTGGATCTTCCTTATAGTGCAGGTGTGGCCAACCCTGTTTCCGGAGAGAGACGCAAGCCTGCAGGTttacaggtctctctaaatgaccaatcattggacaccttgaacacagggacatttagcctaattaagacccacagttggttcaattaagtacttAACGATCTGCTTGATCTAAAGCCTGTAGAGCCTGTGGCTCTCcgggaccagggttagccacccctgctctaGTGCAAGGTTCTCAGGGTTATTTTGGGAAGGACCGTTACTTTTGAAGGGGAGGACAAATGCTTTGGGTTTGtatgttaaatgtgtatttatttacagtctCTGTATACACATCAGTTCTGTATGAACATGTTCTGTTTCACACAGTTGTATTGGCGGAGTTAAAACGGTGATGGCTGATCTTACCACGGCTAGAACAGTAAAAATGGATAATGGTgcttttaaaaaactaaaaacatgccaacattaaatcattataaaCCTTATTAGTTTATATTGATAACCCTGTCCACtctgtttaattgaataaacatTAGATAATGCATATCTGAAGATTGTTCGTGTCTATGACCAGCATCTGTCTATTGATTTTAGTGTTAAATGATTCCACATCATTActataactcttaatataaTGATTCATGCAGTGCTGAATGTCAGTTTAGGAGGAATGTATATTGTATGATGTACAAGTGGCACTGTAATagaagtgtatttattactgttattacaaTTATCTTCCTTAAGGTCCTTACATATCATTATTCATTACCCACACAGCTGTTCTTTCAAATACATCTCAATATCTTCATCTTCATGTCCATTATTGAGGACAGACGGTGGattgacacttttttttatttttataaaaagatAACTCATTCTGAATAAATCAGTCAGCTGATTGCCTTTTGAATAATGGGTTGTATAATTTTCTAACAGAGGTGTGCCCTTTTGTGATTTTACATAATCAAATCTGTGATTCTGTACTTGTCTACATATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139217 lncRNA downstream 115456 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 115456 12759571 ~ 12760836 (-) False G111158
TU139067 lncRNA downstream 745909 12071390 ~ 12130383 (-) False AMCG00006622
TU139038 lncRNA downstream 821337 12049609 ~ 12054955 (-) False AMCG00006621
TU138964 lncRNA downstream 974124 11899963 ~ 11902168 (-) True G110957
TU139248 lncRNA upstream 75954 12954610 ~ 12959628 (-) True G111182
TU139505 lncRNA upstream 1125097 14003753 ~ 14004141 (-) True G111389
TU139544 lncRNA upstream 1257672 14136328 ~ 14137746 (-) True G111421
TU139577 lncRNA upstream 1289475 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 1304125 14182781 ~ 14299856 (-) False G111451
AMCG00006643 mRNA downstream 3737 12859177 ~ 12872555 (-) True AMCG00006643
AMCG00006644 mRNA downstream 24508 12849007 ~ 12851784 (-) True AMCG00006644
AMCG00006642 mRNA downstream 74391 12766012 ~ 12801901 (-) True AMCG00006642
AMCG00006637 mRNA downstream 314856 12547795 ~ 12561436 (-) True AMCG00006637
AMCG00006634 mRNA downstream 431442 12433023 ~ 12444850 (-) True AMCG00006634
AMCG00006647 mRNA upstream 82513 12961169 ~ 12987800 (-) True AMCG00006647
AMCG00006649 mRNA upstream 112147 12990803 ~ 12991381 (-) True AMCG00006649
AMCG00006648 mRNA upstream 119793 12998449 ~ 13024022 (-) True AMCG00006648
AMCG00006651 mRNA upstream 162444 13041100 ~ 13049320 (-) True AMCG00006651
AMCG00006652 mRNA upstream 178232 13056888 ~ 13061928 (-) True AMCG00006652
TU139089 other downstream 735899 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 851744 12017882 ~ 12024548 (-) False AMCG00006618
TU138641 other downstream 2769007 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 3324212 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 3877028 8997637 ~ 8999264 (-) True G110570
TU139375 other upstream 576776 13455432 ~ 13503228 (-) True AMCG00006663
TU139625 other upstream 1481572 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 1846995 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 1846995 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 2874165 15752821 ~ 15753235 (-) True G111767

Expression Profile