RNA id: AMCG00006644


Basic Information

Item Value
RNA id AMCG00006644
length 180
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00006644
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12849007 ~ 12851784 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTCACGTAAGCCATCGCGGTCCTCCCGAATCCAGCTGTGCATTCCCACGGGATCCTGTCCTGAAATCGGCAACATGCTGAGCCTTGGACTCGGGCTCACAATGTGCATAGCAGAgataaCTGCCTTTGACCCTTCCCCTAACTGGAGGCTCCTTTCTCCTGCTTGTGAAGACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139217 lncRNA downstream 88171 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 88171 12759571 ~ 12760836 (-) False G111158
TU139067 lncRNA downstream 718624 12071390 ~ 12130383 (-) False AMCG00006622
TU139038 lncRNA downstream 794052 12049609 ~ 12054955 (-) False AMCG00006621
TU138964 lncRNA downstream 946839 11899963 ~ 11902168 (-) True G110957
TU139248 lncRNA upstream 102826 12954610 ~ 12959628 (-) True G111182
TU139505 lncRNA upstream 1151969 14003753 ~ 14004141 (-) True G111389
TU139544 lncRNA upstream 1284544 14136328 ~ 14137746 (-) True G111421
TU139577 lncRNA upstream 1316347 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 1330997 14182781 ~ 14299856 (-) False G111451
AMCG00006642 mRNA downstream 47106 12766012 ~ 12801901 (-) True AMCG00006642
AMCG00006637 mRNA downstream 287571 12547795 ~ 12561436 (-) True AMCG00006637
AMCG00006634 mRNA downstream 404157 12433023 ~ 12444850 (-) True AMCG00006634
AMCG00006633 mRNA downstream 456306 12386912 ~ 12392701 (-) True AMCG00006633
AMCG00006628 mRNA downstream 468037 12375908 ~ 12380970 (-) True AMCG00006628
AMCG00006643 mRNA upstream 7393 12859177 ~ 12872555 (-) True AMCG00006643
AMCG00006641 mRNA upstream 24740 12876524 ~ 12878067 (-) False AMCG00006641
AMCG00006647 mRNA upstream 109385 12961169 ~ 12987800 (-) True AMCG00006647
AMCG00006649 mRNA upstream 139019 12990803 ~ 12991381 (-) True AMCG00006649
AMCG00006648 mRNA upstream 146665 12998449 ~ 13024022 (-) True AMCG00006648
TU139089 other downstream 708614 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 824459 12017882 ~ 12024548 (-) False AMCG00006618
TU138641 other downstream 2741722 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 3296927 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 3849743 8997637 ~ 8999264 (-) True G110570
TU139243 other upstream 24508 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 24508 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 603648 13455432 ~ 13503228 (-) True AMCG00006663
TU139625 other upstream 1508444 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 1873867 14725651 ~ 14753970 (-) False G111621

Expression Profile