RNA id: AMCG00006645


Basic Information

Item Value
RNA id AMCG00006645
length 372
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00006645
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12938326 ~ 12954435 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCAAGGTAAAGAATAACTTACGGCGGATGACGGCTGGCTTCATGGGCATGGCGGTAGCAATCATTCTGTTTGGCTGGGTCATCGGAGTCCTGGGCTGCTGCTGGGACCGCGGGCTGATGCAGTACGTGGCCGGCCTGCTCTTCCTGATGGGAGCTGGTATCAACTTTGAGCTCTCCCGGTACCCCCGCTATCTCTATGGGCTACCAGATGACATCAGTCATGGCTATGGCTGGTCCATGTTCTGTGCCTGGGGCGGTCTGGGCCTCACCCTCATTGCTGGATTCTTCTGCACACTGGCCCCATCCGTGCAGCCCCTGCCTCGCTCCACCTGCCCCAAATCCAGGCCGGAGAATGGGACCGTCTGTTAA

Function

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139223 lncRNA upstream 90824 12845923 ~ 12847502 (+) True G111161
TU139203 lncRNA upstream 167401 12759571 ~ 12770925 (+) False G111148
TU139201 lncRNA upstream 177485 12759571 ~ 12760841 (+) True G111148
TU139202 lncRNA upstream 177485 12759571 ~ 12760841 (+) False G111148
TU139186 lncRNA upstream 308358 12620709 ~ 12629968 (+) True AMCG00006636
TU139325 lncRNA downstream 399521 13353956 ~ 13357071 (+) True G111240
TU139371 lncRNA downstream 503604 13458039 ~ 13502571 (+) True G111272
TU139484 lncRNA downstream 979231 13933666 ~ 13936254 (+) False AMCG00006672
TU139542 lncRNA downstream 1181884 14136319 ~ 14137744 (+) True G111420
TU139569 lncRNA downstream 1357317 14311752 ~ 14312024 (+) True G111443
AMCG00006646 mRNA upstream 50090 12883776 ~ 12888236 (+) True AMCG00006646
AMCG00006640 mRNA upstream 222161 12714480 ~ 12716165 (+) True AMCG00006640
AMCG00006638 mRNA upstream 284906 12651939 ~ 12653420 (+) True AMCG00006638
AMCG00006636 mRNA upstream 286511 12620062 ~ 12651815 (+) False AMCG00006636
AMCG00006639 mRNA upstream 319379 12617517 ~ 12618947 (+) True AMCG00006639
AMCG00006650 mRNA downstream 61218 13015653 ~ 13035434 (+) True AMCG00006650
AMCG00006653 mRNA downstream 82238 13036673 ~ 13037830 (+) True AMCG00006653
AMCG00006659 mRNA downstream 318062 13272497 ~ 13283101 (+) True AMCG00006659
AMCG00006656 mRNA downstream 328719 13283154 ~ 13324717 (+) True AMCG00006656
AMCG00006655 mRNA downstream 410164 13364599 ~ 13379831 (+) True AMCG00006655
TU138516 other upstream 3370975 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 4214260 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 4761540 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 5283132 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 6026072 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 56749 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 7983062 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 8093901 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 8188430 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 11077678 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile