RNA id: AMCG00006646


Basic Information

Item Value
RNA id AMCG00006646
length 453
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00006646
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12883776 ~ 12888236 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCTGGCAAGCTGCTCCTCTACGCCGGCCTCTCTCTCGCACTGTGCGCACTGGGCATGTTGGCAGTGGCTATCTGCTCCGACCACTGGTACGAAACGGACGCCCGGAGGTACAGGGAGAGGTGCAAAAGTTTCTCCAGCCGCAGGAAGGACCCGGGCTTTATTTACAATTCCAACAACAGCCTCCCACTGAGGGCAAGCAGGTCGAGGCTGGACCGCTGGGAGGAGAAGCTGCTGCTGGCCAGGAATCGGCGGCAGCTGTTCGCGATGAGCGCGGCGGATGAGTGCAGTAGGCAGTATAACTCCACCAACATGGGGTTGTGGAGCAAATGCCACCGGCTTGGATTTGACCAGGATATTGAAGACCACGTTGCAAAAGTCATAAGCAACAACCTTGAGCATTGTAGTCTTCTTGTATTGAACGGGCCCCTACTGCAGATCAAATGGTGA

Function

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139223 lncRNA upstream 36274 12845923 ~ 12847502 (+) True G111161
TU139203 lncRNA upstream 112851 12759571 ~ 12770925 (+) False G111148
TU139201 lncRNA upstream 122935 12759571 ~ 12760841 (+) True G111148
TU139202 lncRNA upstream 122935 12759571 ~ 12760841 (+) False G111148
TU139186 lncRNA upstream 253808 12620709 ~ 12629968 (+) True AMCG00006636
TU139325 lncRNA downstream 465720 13353956 ~ 13357071 (+) True G111240
TU139371 lncRNA downstream 569803 13458039 ~ 13502571 (+) True G111272
TU139484 lncRNA downstream 1045430 13933666 ~ 13936254 (+) False AMCG00006672
TU139542 lncRNA downstream 1248083 14136319 ~ 14137744 (+) True G111420
TU139569 lncRNA downstream 1423516 14311752 ~ 14312024 (+) True G111443
AMCG00006640 mRNA upstream 167611 12714480 ~ 12716165 (+) True AMCG00006640
AMCG00006638 mRNA upstream 230356 12651939 ~ 12653420 (+) True AMCG00006638
AMCG00006636 mRNA upstream 231961 12620062 ~ 12651815 (+) False AMCG00006636
AMCG00006639 mRNA upstream 264829 12617517 ~ 12618947 (+) True AMCG00006639
AMCG00006635 mRNA upstream 343768 12530340 ~ 12540008 (+) True AMCG00006635
AMCG00006645 mRNA downstream 50090 12938326 ~ 12954435 (+) True AMCG00006645
AMCG00006650 mRNA downstream 127417 13015653 ~ 13035434 (+) True AMCG00006650
AMCG00006653 mRNA downstream 148437 13036673 ~ 13037830 (+) True AMCG00006653
AMCG00006659 mRNA downstream 384261 13272497 ~ 13283101 (+) True AMCG00006659
AMCG00006656 mRNA downstream 394918 13283154 ~ 13324717 (+) True AMCG00006656
TU138516 other upstream 3316425 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 4159710 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 4706990 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 5228582 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 5971522 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 122948 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 8049261 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 8160100 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 8254629 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 11143877 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053536 False 1052 mRNA 0.58 4 NC_007115.7 12113105 ~ 12230144 (+)
grasscarp (Ctenopharyngodon idella) CI01000020_05173157_05261798.mRNA True 882 mRNA 0.57 4 CI01000020 5173157 ~ 5261798 (-)