RNA id: AMCG00006649


Basic Information

Item Value
RNA id AMCG00006649
length 579
RNA type mRNA
GC content 0.48
exon number 1
gene id AMCG00006649
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 12990803 ~ 12991381 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGTGGGTATGGATACGAGTCAAACGTAGAAGCTACCGGGGAGCAAAAAGATTGGGGAAAGCAACTTTCCATTACCACGCCTTCATCTCCTACAGTCAGGAAGACTCCGCCTGGGTTCACAGCCAGCTGGTAACCAACCTGGAGAATGAAGCCTTTAGTCTTTGCATTCATGAGCGGGATTTTGTACCAGGGGACTGGATTATAGACAACATCATCAACTCTGTGGAGTGTAGCTACAAGACGCTTTTTGTTCTCTCCCAGAACTTTGTTAGAAGTGAGTGGTGTAACTACGAGCTCTTCTTTGCCCAACACAGAGCTATCAGTGTCCAGCAGAACTCACTGGTCTTCATTCTGCTGGAGCCCATTCCCACAGACTCCCTCCCCAAGAAGTTCCTGAAGCTAAGGACTCTGCTTGGGAAGCAGACCTACCTGGAATGGCCAAAGGAGGAGAGGAAACAGCTGCTCTTCTGGGCCAGCTTGAAGTCCACGCTGAAAACAGCTGATAAACACATCATTTTGAAGGATGTGTCAAAAGCCATAATAGACTCCTGTTCTCTCCTGGTATTCAATGAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139248 lncRNA downstream 31175 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 229967 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 229967 12759571 ~ 12760836 (-) False G111158
TU139067 lncRNA downstream 860420 12071390 ~ 12130383 (-) False AMCG00006622
TU139038 lncRNA downstream 935848 12049609 ~ 12054955 (-) False AMCG00006621
TU139505 lncRNA upstream 1012372 14003753 ~ 14004141 (-) True G111389
TU139544 lncRNA upstream 1144947 14136328 ~ 14137746 (-) True G111421
TU139577 lncRNA upstream 1176750 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 1191400 14182781 ~ 14299856 (-) False G111451
TU139582 lncRNA upstream 1194227 14185608 ~ 14223328 (-) False G111451
AMCG00006647 mRNA downstream 3003 12961169 ~ 12987800 (-) True AMCG00006647
AMCG00006641 mRNA downstream 112736 12876524 ~ 12878067 (-) False AMCG00006641
AMCG00006643 mRNA downstream 118248 12859177 ~ 12872555 (-) True AMCG00006643
AMCG00006644 mRNA downstream 139019 12849007 ~ 12851784 (-) True AMCG00006644
AMCG00006642 mRNA downstream 188902 12766012 ~ 12801901 (-) True AMCG00006642
AMCG00006648 mRNA upstream 7068 12998449 ~ 13024022 (-) True AMCG00006648
AMCG00006651 mRNA upstream 49719 13041100 ~ 13049320 (-) True AMCG00006651
AMCG00006652 mRNA upstream 65507 13056888 ~ 13061928 (-) True AMCG00006652
AMCG00006654 mRNA upstream 96074 13087455 ~ 13141147 (-) True AMCG00006654
AMCG00006658 mRNA upstream 362303 13353684 ~ 13357478 (-) True AMCG00006658
TU139243 other downstream 112147 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 112147 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 850410 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 966255 12017882 ~ 12024548 (-) False AMCG00006618
TU138641 other downstream 2883518 10087278 ~ 10107285 (-) True AMCG00006579
TU139375 other upstream 464051 13455432 ~ 13503228 (-) True AMCG00006663
TU139625 other upstream 1368847 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 1734270 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 1734270 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 2761440 15752821 ~ 15753235 (-) True G111767

Expression Profile