RNA id: AMCG00006650


Basic Information

Item Value
RNA id AMCG00006650
length 3673
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00006650
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13015653 ~ 13035434 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCAGGATGGATTTCACTCCAGCTGAAACCACAGTGATGGGTGTGCGGCCTAACTCAGTCAGGTCTGCACTGACATCCATTGCTGAGAAgAATCTGCCCCTGCGGTCCCCAGGTACTGCACTGCCTCCAAAGCTGACACCGTGGAGCCCGAACACAAGCCTCGACTTCCGGAGATTGCCGATCCGCTCCGAGCGCGGCCAGCCGGAAGATCCGGCTTCAGAGCTTAAGATAAACAGTAATGGCGGAGGCGGCTGCGGCATCTACAGCAGCTCCAGCAATAACAGGAGGCTGGACCAAACACGTCACCTGCAGGTGTTGACTCCTTTTCAAGGTTACTGGCTGAGGTATTTCATGCACGGGGTTTGCAAAGAAGGGAGCAACTGCCGATATTCCCATGATCTCAAACCAGCCATGATTTGTAAATACTTCCAGAAAGGATGCTGCGCTTATGGGGACCGCTGCAGGTATGACCACTCAAAACCACCCAAGCAGGACGAACTGGACGGTCCCAAGCCAATGATGCCACGGACTCTCAACCCCACCTCTGATGGCACCCTTTTTTCCAAGTCCTCTGGGCCCAGTGGTAGGGCTGACCTCCTGGAGCATCCACATAGCTCAGGCGCTGTAGACTGGGTCAACGCTGCAGAGTTTGTGCCAGGGCAGCCATACTGTGGACGGGCTGACTCGGTCCTGGAGGAGGAGCCTGGGCTGGTGATCGAGGAGGAGTACGAGAAGGAGCAGGCGAATAAGGAGTTGAAGAAGCAGCTTTGCCCATATGCGGCAGTCGGGGAGTGCCGATATGGTGTGAATTGCGCCTATCTGCACGGGGACGCCTGCGACATGTGCGGGCTACAGGTCCTCCACCCCTCCGACTCTACCCAGAGATCGCAGCACATCAAAGCTTGTATCGAAGCTCATGAGAAGGACATGGAGATCTCGTTTGCCGTCCAGCGCAGTAAAGACATGATGTGTGGGATCTGCATGGAGGTGGTGTATGAGAAAGCCAACCCTAGCGAGCGGCGGTTTGGCATCCTTTCCAACTGCAACCACTGCTACTGCCTGAAGTGCATCAGAAAGTGGAGGAGCGCCAAGCAGTTTGAGAGCAAGATTATTAAATCCTGCCCTGAATGTCGGATTACATCAAACTTTGTGATCCCCAGTGAATACTGGGTGGAAgacaaggaagaaaaacagaaacttaTCCAGAAATACAAGGATGCTATGAGTGGCAAGCCATGCAGATATTTTGATGAAGGCCGTGGCACCTGCCCCTTCGGGGGGAACTGTTTCTATAAGCATGCTTATCCCGATGGCCGTCTGGAGGAGCCCCAGCCACAGAGACGGCAGCTGGGTTTGGCAGGGAGACACCGGaatCAGAGACGGACACCTCTTTGGGATATCTTTGACGAGCGAGAAAGCACCGACTCCTTCGACAATGAAGATGAAGACGTCGTGACCTTCGAGTTGAGTGAGATGTTGCTCATGCTACTGGCGGCCGGCACTGACGATGAAATCACAGATTCGGAAGACGAGTGGGACTTGTTTCATGAAGAGCTGGACGATTATTACGAGGTTTACCTATagcactgcccccccaccacccccaaaaCCCTGATCCCATCCCAAGTACCCAGTATGGACTGTCTTGTGTGAGTGTTGGACAGTAGCTTCTTTCCCCTGTGTTGTGGCAGTGCCTTTCAGCAGGCCATgaaattaataacttaaaaaaattaaaaatatgaaaatacagacaaaaagcGGGCGGTACAATTAAAACCTTTTCTAGAATCCTGTCCGTTCTGTGAGTCTGTCAGTGtccactttatttaaaaatcacaaaaagaaaCTACAAATGAACATGCTAATAAACCTCCTTAAGTTAATTCATGGGTGTGGGTTTGACTTGTATATCATCTACCCAGGTGTTTTAAAGACTGTGTTTCTGAGGATCTCAATGACAACAATCTACTGGTGATGGTTGTGGAGTTTGTAAGACCCTAAGCTTTATGCAGGACTTGTAGGTTTATTTCCGTCGTGCACTGAGGTGAGGTTGGGTTTACTCAAACATCTCTCCTACACAAATTTCTACGTTTTTAACAGACTTCATTTCCCGATCTACAGTACCGAATGTTGTTGAACACTATTTTCTTGCTTTGAAGTGGGTCCGTTTTGCTGGTGTATGATTTCAAATAGACTGATTCACAATCATTAGCAACACCTGTGGTACCTAATAGCAAGTCCCTGCTCAGAAATGGATTTGAATAGTCACAGTTTGCACTTTGTCTGcagactacagaagcagaaactaTGAATCCGAGTGTTTGTAACCGTATGAAAAAGCATCATTCCACTAAAGACGATTTGTGAACATTGAATTCTTAGGCAAACCAGAAAGAGCCATGCCACAAGAACCTGATGTTTATCTGTGTTTAGTTACAGtataaagtatgtatttatacagtatGTGCAGGTTTTTATGATATAAATCATTCAACATTACTTGAAgattaaagtttattttcatcaaatgATCCCAGGTTTCATTGGATGCCTTTTTCCTGATCGAACTTGAACGCAAAAATTATTTCCTGGGAAAACTCGCAAAGaatttgattaaatgtgttatggtatcttttctttatttaattgaatgtctcttattgtttgttttggtccTGTATATTTTATAGCTCTTCAACGCGTGTGCTCTGGTATTGGCATGAATTGCCATCTGTTTCGGAGAGTGtttgtcaaataaaaacactgttaacAGGTTTGGTTTTGCTCTGGACAGGTATGCAGGTGGGTATAATGTTGTGGGCTTGAGTTTGCTAGTTTGAACTACTTAAATGGTCTTCACTGTGTGTCCACGATTCCCCCAGTACCTTGATGGTGATGGCAATtgtcaaattatatatacatatgctgATTGATTAACTAATATAAAACTGGAATGTTACAATTGAATGCAGATTAAATCAGTgcaatacatttatgtatttaatttgcagCAGTGCTATAGACAACATAACAAAACGCACATAAATAACCTTACTGCAGCGCATGTTCATTTCATCGCAGTGGTGCGAGTCTCCTCAAAGCATTTGGATCGGTGATTTTTCTTGTTGCGAGGCTGTGTTCTCCATCCCCACCCTGTGAACGCTCAGAGTGAATAGTCTGACCTTATTACAGCAGCCATCCCTCTGCTGTTCACCTATAATTTACAACCAAATTTAAACTAGtatatctgtttatatatacttGCATGTGTTCCTTCTGTGTGCTGTTCGCTGGTTTTGAATGGTGTTTGTGTGGTGAGGTTCCACAGAAGAAACCATATCTGTGACCTGTTTAATGACTTAAATACTTTTGTTCCTTTTTCCTAGACAAGAAACAAATGAAGGTTCTTATAGATATGCAGGCTATGATGTGGTTTCAGATTTATTATAATGAAGCCCAAACCCTGGGACTATACACCCTTCTCATTCCccctaaataataaataaataaagacttgttcATAATGTACACTTGCATTTTCTTTGCTAGATCTTagttgtgctgtattgtgtatacattaatatgtagaatatatacatacatacagattaTAAAAATGACCAAATTGGGGATATGTAGAATGTAGGTATTGTGAAACTAAATGGTTGAG

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K15687 MKRN; E3 ubiquitin-protein ligase makorin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139223 lncRNA upstream 168151 12845923 ~ 12847502 (+) True G111161
TU139203 lncRNA upstream 244728 12759571 ~ 12770925 (+) False G111148
TU139201 lncRNA upstream 254812 12759571 ~ 12760841 (+) True G111148
TU139202 lncRNA upstream 254812 12759571 ~ 12760841 (+) False G111148
TU139186 lncRNA upstream 385685 12620709 ~ 12629968 (+) True AMCG00006636
TU139325 lncRNA downstream 318522 13353956 ~ 13357071 (+) True G111240
TU139371 lncRNA downstream 422605 13458039 ~ 13502571 (+) True G111272
TU139484 lncRNA downstream 898232 13933666 ~ 13936254 (+) False AMCG00006672
TU139542 lncRNA downstream 1100885 14136319 ~ 14137744 (+) True G111420
TU139569 lncRNA downstream 1276318 14311752 ~ 14312024 (+) True G111443
AMCG00006645 mRNA upstream 61218 12938326 ~ 12954435 (+) True AMCG00006645
AMCG00006646 mRNA upstream 127417 12883776 ~ 12888236 (+) True AMCG00006646
AMCG00006640 mRNA upstream 299488 12714480 ~ 12716165 (+) True AMCG00006640
AMCG00006638 mRNA upstream 362233 12651939 ~ 12653420 (+) True AMCG00006638
AMCG00006636 mRNA upstream 363838 12620062 ~ 12651815 (+) False AMCG00006636
AMCG00006653 mRNA downstream 1239 13036673 ~ 13037830 (+) True AMCG00006653
AMCG00006659 mRNA downstream 237063 13272497 ~ 13283101 (+) True AMCG00006659
AMCG00006656 mRNA downstream 247720 13283154 ~ 13324717 (+) True AMCG00006656
AMCG00006655 mRNA downstream 329165 13364599 ~ 13379831 (+) True AMCG00006655
AMCG00006665 mRNA downstream 544159 13579593 ~ 13592716 (+) True AMCG00006665
TU138516 other upstream 3448302 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 4291587 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 4838867 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 5360459 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 6103399 6911876 ~ 6912254 (+) True G110163
TU140941 other downstream 7902063 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 8012902 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 8107431 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 10996679 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 11269345 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053537 False 2383 mRNA 0.49 8 NC_007115.7 12292274 ~ 12307834 (+)