RNA id: AMCG00006652


Basic Information

Item Value
RNA id AMCG00006652
length 1855
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00006652
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13056888 ~ 13061928 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCAGCCCAGCAGCGCAGTCACTGAGGGATGCATCAGCTCCAGCGCACCGGCAGCTCTTCAGCAATCCCTCTAAAACTCAACATTGCGACTTAGTCTCGCAACAATAAAACCGGGGCACCGATAGGTTTGATTTCTAACTAATACTCAGAGTGGAGACGCAGCTGCGGGATCATGAATGACATTAAACTTGCAGTTCTTGGCAGTGATGGAGTTGGGAAATCAgCCCTGATAGTGCGATTCCTAACCAGACGATTTATTGGCGAGTATGCATCATCTTCAGAGAGTATATACAGAAAACGCCTGTCTATAGATGGAAGACAAATTAATCTAGAAATATATGACCCATGTTCTCAACTTTGTGAAGGGAAGCCCTCCTTGCATGATCAAATGCACTGGGCGGATGGCTTTGTCGTGGTCTATGATATCAGTGATCGATCTTCCTTCACAACTGCAAAAGCCATAATACACCTGATACGACAGCTGCACTTGGGAGTCACCAAAAGGGATGTGGATTCAGTGGTTTTTCTGGTTGGAAACAAACAGGATCTCTGCCACGTGAGAGAGGTTGGCCGAGAGGAAGGTCAAAAGCTGGCAGCTGACAATAAGTGCCAGTTTTATGAATTGTCGGCGGCCGAGCACTACCAGGAGGTGGCTGTCATGTTCTCGAAAATTATCCGGAACGCCAGTGTGAACGGCAAAGTCAAAGACAAGAGGAGGCCCAGTGGCTCCAAATCAATGGCCAAACTCATCAACAATGTCTTTGGGAAAAGAAGAAAGTCAGTGTAGTCCGCCAGTGTGAGAGTGTTATCATAAGCGATACCCACAGGTGTGTCAATATGGACTGGGGATAAGATTGTGGGTGATTTAGAGATGCTATTGTTTtgattgtacattattttattaagtataACAACAGAGCCCATTCACCTGCAATCAAACCCCCAGTATTTCTGCATTTCAGTTCTAAACTTTATGCTTTACTTATGAggatgattttatattttatttttttatattattctttagaTGTTAGGCCACAGGTAATACCAAATCGAACTAGACTAATAGTTCTGTTTATGCTGAGGTCTGCCAGAATATATTGTatgtgaataataattataataatacagctTATTATAATATAACTTATAAGCTATAGTGTAACTTTCAAACTGTTTCCTTTTTCCAAGTAGTATAGTTTTAAGAATGAGGGAATTGCTTTGTACAAAAGCAGCTGGCTGCACAAAAGtaagaaaatattataattacatttttactttttaagttTTAGTTATGTGATGCTTTgggatattaaaacaaatgatatgCACTGTATGTACAATGTTTATTCAAGGATGATATTCATTGTATTGGGCCTGAGAGTTACCTGTCTGTAACTCTGCATTGATGTAGATGTGAAAACGTGCTACACATTTAAAAGGACGACACCTGGGCTAAGAATTAAAAGCTGTgcttaaaacatatattaagcTGCTGTGAAAGCtatccacatttaaaaatgttaaaatatgtatacattcataATATTTGCATGATAATTATTGAGTGATAATATAAAGATGAAGAATGTTAGGTAATTTGGATGATGGGGGTGAGTTCATGTCAGTTCAGAGGGCTGGGGCAGTGATCTGTAAGacgtgtatttgttttacagaataaGCCATTAGTTATCTAGCTGTGTATAGGTCTCTCCAAAGTAAATACAACTTCTTAATGCAGTGCTAGCGTATAGAACTCGCCAATGTTGTTACTGTAAATAAAGCACAAGTTACTGAAACTGATGCTTTTATTGACTGCTTAACATCACCATGTCTCCTGTATGACACGAGTTT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17198 RERGL; Ras-related and estrogen-regulated growth inhibitor-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139248 lncRNA downstream 97260 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 296052 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 296052 12759571 ~ 12760836 (-) False G111158
TU139067 lncRNA downstream 926505 12071390 ~ 12130383 (-) False AMCG00006622
TU139038 lncRNA downstream 1001933 12049609 ~ 12054955 (-) False AMCG00006621
TU139505 lncRNA upstream 941825 14003753 ~ 14004141 (-) True G111389
TU139544 lncRNA upstream 1074400 14136328 ~ 14137746 (-) True G111421
TU139577 lncRNA upstream 1106203 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 1120853 14182781 ~ 14299856 (-) False G111451
TU139582 lncRNA upstream 1123680 14185608 ~ 14223328 (-) False G111451
AMCG00006651 mRNA downstream 7568 13041100 ~ 13049320 (-) True AMCG00006651
AMCG00006648 mRNA downstream 32866 12998449 ~ 13024022 (-) True AMCG00006648
AMCG00006649 mRNA downstream 65507 12990803 ~ 12991381 (-) True AMCG00006649
AMCG00006647 mRNA downstream 69088 12961169 ~ 12987800 (-) True AMCG00006647
AMCG00006641 mRNA downstream 178821 12876524 ~ 12878067 (-) False AMCG00006641
AMCG00006654 mRNA upstream 25527 13087455 ~ 13141147 (-) True AMCG00006654
AMCG00006658 mRNA upstream 291756 13353684 ~ 13357478 (-) True AMCG00006658
AMCG00006657 mRNA upstream 330977 13392905 ~ 13405015 (-) True AMCG00006657
AMCG00006660 mRNA upstream 352811 13414739 ~ 13417932 (-) True AMCG00006660
AMCG00006663 mRNA upstream 421336 13483264 ~ 13502534 (-) False AMCG00006663
TU139243 other downstream 178232 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 178232 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 916495 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 1032340 12017882 ~ 12024548 (-) False AMCG00006618
TU138641 other downstream 2949603 10087278 ~ 10107285 (-) True AMCG00006579
TU139375 other upstream 393504 13455432 ~ 13503228 (-) True AMCG00006663
TU139625 other upstream 1298300 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 1663723 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 1663723 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 2690893 15752821 ~ 15753235 (-) True G111767

Expression Profile