RNA id: AMCG00006656


Basic Information

Item Value
RNA id AMCG00006656
length 453
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00006656
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13283154 ~ 13324717 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGTTCCCGTCTGCAGCAGCACCGCCTGCAGTTAGACGAGCGCACACACTTGTGGGTGTCTTTCAAGGTCACTGGGCCCCACAGAGAGAGCGCCGTGGTTCAGTTAGCCTGTAACGAAAAAGACAACGAAGGACCCAGCTCAGGCGAGGCTGGGCTTCAAGAGAGTTGTGACAATGAGTCGGGCAGCTCCTCCACAGACCTGGAGCGCTCAGCACTGCTGTTATTTGGTGTCACGGGGAACTGTGCAGCCTGCAGCAAACTTATCCCTGCCTTCGAGATGGTAATGAGAGCCAAGGACAATGTTTACCACTTGGACTGCTTCGCCTGCCAGCTTTGCAATCAGAGGTTTTGTGTGGGAGACAAGTTTTTCTTGAAGAACAATATGATTCTTTGCCAGACAGACTACGAGGAAGGCTTAATGAAAGAAGGCTATGCACCCCAGGTTCGCTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24098 LMO1_3; rhombotin-1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139223 lncRNA upstream 435652 12845923 ~ 12847502 (+) True G111161
TU139203 lncRNA upstream 512229 12759571 ~ 12770925 (+) False G111148
TU139201 lncRNA upstream 522313 12759571 ~ 12760841 (+) True G111148
TU139202 lncRNA upstream 522313 12759571 ~ 12760841 (+) False G111148
TU139186 lncRNA upstream 653186 12620709 ~ 12629968 (+) True AMCG00006636
TU139325 lncRNA downstream 29239 13353956 ~ 13357071 (+) True G111240
TU139371 lncRNA downstream 133322 13458039 ~ 13502571 (+) True G111272
TU139484 lncRNA downstream 608949 13933666 ~ 13936254 (+) False AMCG00006672
TU139542 lncRNA downstream 811602 14136319 ~ 14137744 (+) True G111420
TU139569 lncRNA downstream 987035 14311752 ~ 14312024 (+) True G111443
AMCG00006659 mRNA upstream 53 13272497 ~ 13283101 (+) True AMCG00006659
AMCG00006653 mRNA upstream 245324 13036673 ~ 13037830 (+) True AMCG00006653
AMCG00006650 mRNA upstream 247720 13015653 ~ 13035434 (+) True AMCG00006650
AMCG00006645 mRNA upstream 328719 12938326 ~ 12954435 (+) True AMCG00006645
AMCG00006646 mRNA upstream 394918 12883776 ~ 12888236 (+) True AMCG00006646
AMCG00006655 mRNA downstream 39882 13364599 ~ 13379831 (+) True AMCG00006655
AMCG00006665 mRNA downstream 254876 13579593 ~ 13592716 (+) True AMCG00006665
AMCG00006666 mRNA downstream 283266 13607983 ~ 13609375 (+) True AMCG00006666
AMCG00006668 mRNA downstream 298277 13622994 ~ 13634454 (+) True AMCG00006668
AMCG00006667 mRNA downstream 315422 13640139 ~ 13668688 (+) True AMCG00006667
TU139270 other upstream 239706 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 3715803 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 4559088 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 5106368 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 5627960 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 7612780 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 7723619 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 7818148 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 10707396 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 10980062 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile