RNA id: AMCG00006657


Basic Information

Item Value
RNA id AMCG00006657
length 1871
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00006657
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13392905 ~ 13405015 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGGAAGTCAGCTTTATTCTGTGTGGAGTGCAGCAGTTACTCCAAACTCAACCACAagtttctgtattgtttaaatcTTATCAGGTTTCCTTCACAATGTCAGCAAGAAACCCAGGGATTGAACTTGACCTAGAATGGCTGTCCAATGTCCGAGTAAATCACCCTGCAGTTTTGAGACGGGCACAGCAAATACAGAGCCGAAAGTTAGTAAAGAAAGAGTGGCAGGCAGCGTGGCTACTGCGAGCGGTGACGTGTATAGACCTGACCACGCTGTCCGGTGATGACACCCCTTCCAACGTCCACCGGCTGTGTTTAAAAGCCACTCGGCCCATCAGGGATGACCTCCTCAAAAGCATGGACATGCATGACAAAGGTGTCACTACAgcggcagtgtgtgtgtacccGGCCCGTGTAGCGGACGCTGTGAAAACACTTCGGGCAGCCAAATCTAACATCCCTGTGGCCTCAGTTGCCACTGGGtttcctgcgggacagacagcCTTGAAAACCCGCATTGAGGAGGTGCGGCAGGCCGTAGAGGATGGAGCCAGCGAGATTGACATTGTCATTAACAGGACCCTGGCGCTCACCGGGCAGTGGCAAGCTCTGTACGACGAGATCCGCCAGTTCAGGGAAGCCTGCGGAGAAGCGCATATGAAGACCATCCTGGCAGTGGGAGACCTAGGGTCCTTCACCAACGTTTACAAAGCCAGTCTGGTAGCTATGATGGCAGGTTCGGATTTCATAAAGACCTCTACTGGGAAGGAGACGGTCAACGCAACATTTCCAGTTGCTATTGTCATGGTGAGGGCCATACGGGACTTCCTGCGGCGCACTGGTCACAAGGTGGGTTTCAAGCCTGCAGGAGGGATCCGCACAGCCAAGGAGTCCCTGGTGTGGCTGACGCTGATGAAGGAGGAGCTGGGAGACGAGTGGCTGAGAGCGGATCTCTTTCGTCTGGGTGCCAGCTCTCTGCTGACAGACATCGAGCGGCAGATCTACCATTACGTGACTGGAAGATACCCAGCGTACTATGAGTTGCCCATGGCCTGAATCCAAGCAGCTTGAAATCTCAGTCAACCTTGTGGTAGAAGCTACTACGAATCTACGAACATAGGTCTTACACCAACTGTAGCCTAAATTAATGCTCTCGTTCATTACAGACCATCCATCCTACAGACaaaattactttatatatataattttttacaaatacataaaaatgggtAATAGTCAGAGAGGGGAATACGTATTAAAACGtactgggggggaaaaaaaatgacttttcaTAAAACCAAGGTTGATGCATTGTTGAGCCTTGGTCCATTAATTCACTATTAATGATTGGCCATCCagattcttttaatttaatgtccaTGACTACAGCGTGCATATCTGAATATAGCAATTATAGTTTAATTTGTGCCTTGAAGAACCCGAACCTGGTAGACCCTCGATGAAAGAAACCTGTTCTTTGAAAGTCAGCCCTGATATGAACCCTGaaagaatttattttataaaacggCTAGATAGACATTCCATCcgcatttttttccccatatttTTTGGCTACTATACTGGTGCTActatacacaaaatatttttcttagcTGAAACGGTTAAATTCTGAACTGGTAAAGTATTAtttatgacattttcattttgttacctaatgtttaatgttatgttttgatatTAGATATGTTACAGTAAAGAAATTACAGTGATTCATgtgaaaacattgaaatcaTTGTACAAATTCAgccacaattaattaattaaaacagtctATTCtcacataattattattgctgtatttattggTCCACAATTCTGTTttagaaatcaataaaacatttggtATTACAC

Function

GO:

id name namespace
GO:0009264 deoxyribonucleotide catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004139 deoxyribose-phosphate aldolase activity molecular_function

KEGG:

id description
K01619 deoC, DERA; deoxyribose-phosphate aldolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139248 lncRNA downstream 433277 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 632069 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 632069 12759571 ~ 12760836 (-) False G111158
TU139067 lncRNA downstream 1262522 12071390 ~ 12130383 (-) False AMCG00006622
TU139038 lncRNA downstream 1337950 12049609 ~ 12054955 (-) False AMCG00006621
TU139505 lncRNA upstream 598738 14003753 ~ 14004141 (-) True G111389
TU139544 lncRNA upstream 731313 14136328 ~ 14137746 (-) True G111421
TU139577 lncRNA upstream 763116 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 777766 14182781 ~ 14299856 (-) False G111451
TU139582 lncRNA upstream 780593 14185608 ~ 14223328 (-) False G111451
AMCG00006658 mRNA downstream 35427 13353684 ~ 13357478 (-) True AMCG00006658
AMCG00006654 mRNA downstream 251758 13087455 ~ 13141147 (-) True AMCG00006654
AMCG00006652 mRNA downstream 330977 13056888 ~ 13061928 (-) True AMCG00006652
AMCG00006651 mRNA downstream 343585 13041100 ~ 13049320 (-) True AMCG00006651
AMCG00006648 mRNA downstream 368883 12998449 ~ 13024022 (-) True AMCG00006648
AMCG00006660 mRNA upstream 9724 13414739 ~ 13417932 (-) True AMCG00006660
AMCG00006663 mRNA upstream 78249 13483264 ~ 13502534 (-) False AMCG00006663
AMCG00006661 mRNA upstream 124360 13529375 ~ 13532102 (-) True AMCG00006661
AMCG00006664 mRNA upstream 134583 13539598 ~ 13550291 (-) True AMCG00006664
AMCG00006662 mRNA upstream 155442 13560457 ~ 13573463 (-) True AMCG00006662
TU139243 other downstream 514249 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 514249 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 1252512 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 1368357 12017882 ~ 12024548 (-) False AMCG00006618
TU138641 other downstream 3285620 10087278 ~ 10107285 (-) True AMCG00006579
TU139375 other upstream 50417 13455432 ~ 13503228 (-) True AMCG00006663
TU139625 other upstream 955213 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 1320636 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 1320636 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 2347806 15752821 ~ 15753235 (-) True G111767

Expression Profile