RNA id: AMCG00006661


Basic Information

Item Value
RNA id AMCG00006661
length 1628
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00006661
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13529375 ~ 13532102 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagtgAGGTTAGGGGGGAGACAACTGAAAGTCTTTCAAGCACCATTGGAATGagctggaaaaataaactatgtaaACTGGCTCTGCAGCCAAAAAGAAAGAGGAACTTGTCCAAAACCCTCCACATTGAGTGAGCGAGTACGCCGCCAAGAAATAGTAGAGGGAATCCTGCCCCtgcatgtttttaatcatttcttTATACTGTGGTTTCCACCTACCAATGGCATCGCTCTGTGTGCAGTCACGGGTGAGAGATTGTGGAGTTCAGCCTGTTACATCAGAACTGTCTGAAATGTACCATGCATGCTCCAAAACAAGCTGGAGTCTGGAGCACAGAAACCTTTTTCCCTCAATAGAAGCTTCCTTTTTGTATTCAACGTAGTCTATGAATTACTGAAAGACTTTTTTCAGTCTTTCCTTGAGCACATTCCTAATCACAGTTATCAGGACTGCCCATCAGGAGCATGCTGTAGTATGAACACCATCTCATCCCAAGATAGATTTTTATGAGTTTAAAGGTACTTCATTTTTAACCTGTGGCTAGCTTATACTTTTACGTTTGATTCCAGTAATTAATCTCATGAGGTTTAACATTCACAAATATTTAGTGGTGTGCTGTTAAAGTGGCCATATTGGAGTttactattaaaacaaaactgaaaagaaaaattacaTGGTTCCTGATCTCCCTGTGGTTGTACTCTTTCATTTCCTAGGATGGCCTTCTTTCTTTGAGTTGATCAAACAAGATGCAGTCTCCCAGACAGATGACTTCTCTTTTGGGATGCATAGAGTTGAGACCAGTTGCAGTCAGTGTGGGGCACATCTGGGACATCTCTTTGATGATGGCCCACCTCCGACTGGTAAGCGATATTGTATCAACTCAGCCTCCCTAGCCTTCCAGGCCAAGGCACAGGCCGCCTCCGCCTCTGAAGAGGGCGCAGGGAAGGCGGAGGGTGGGGGGACAAAGAGCAGCCCCCCAGGTGAGACAGCGGCTTCCGGAAAGACTGAGCTTTAAGCCGTGCTACAGTGGACCCCTGAACAAAGTGCAGCTTCCCATCAGCCCTAGTGGTGGCCATCGATACTGAGCAGGTGGTGCCAGACATCCACAAGAGCAAGTCTCCACAGACAAGGATTACCAGAAGAAAACAACTGTATTATTTGCAATAtgcatatcattttaaaaatattttttgtagtgaaaatgctgttaaattttaaatatttaactttggCTTTTGggtaatacatatacatatatattaatacatgtcTTTGTCCGAAGAATAATGAAACTTGGTTGTCTGTTCAAAAATATCTAGGTATAATTTGTTACAATTCCATGTCATTTTTGAAGTGATACTTGATACTGAGAGTATGAACATCTATGCAAGTACATTCTGAGCGGTTTAATGAACATCAAGTAGAAAACAATGCATCCTGGGAACAGATGGGACAGATGACATATGGTCACACAAAGCGTAAATGCAACTTGGCCTTTAAAGGATATTTTTTCTCCTTGTGGATTGATTCCTCTTGttatgttttgaatattttccCTATTTTGAATCCCTGACAGAGTATAAGAAATAGCCTTGTACTTAAATAAAACTCAAGACTGTTGATACA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function

KEGG:

id description
K07305 msrB; peptide-methionine (R)-S-oxide reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139248 lncRNA downstream 569747 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 768539 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 768539 12759571 ~ 12760836 (-) False G111158
TU139067 lncRNA downstream 1398992 12071390 ~ 12130383 (-) False AMCG00006622
TU139038 lncRNA downstream 1474420 12049609 ~ 12054955 (-) False AMCG00006621
TU139505 lncRNA upstream 471651 14003753 ~ 14004141 (-) True G111389
TU139544 lncRNA upstream 604226 14136328 ~ 14137746 (-) True G111421
TU139577 lncRNA upstream 636029 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 650679 14182781 ~ 14299856 (-) False G111451
TU139582 lncRNA upstream 653506 14185608 ~ 14223328 (-) False G111451
AMCG00006663 mRNA downstream 26841 13483264 ~ 13502534 (-) False AMCG00006663
AMCG00006660 mRNA downstream 111443 13414739 ~ 13417932 (-) True AMCG00006660
AMCG00006657 mRNA downstream 124360 13392905 ~ 13405015 (-) True AMCG00006657
AMCG00006658 mRNA downstream 171897 13353684 ~ 13357478 (-) True AMCG00006658
AMCG00006654 mRNA downstream 388228 13087455 ~ 13141147 (-) True AMCG00006654
AMCG00006664 mRNA upstream 7496 13539598 ~ 13550291 (-) True AMCG00006664
AMCG00006662 mRNA upstream 28355 13560457 ~ 13573463 (-) True AMCG00006662
AMCG00006669 mRNA upstream 78171 13610273 ~ 13616189 (-) True AMCG00006669
AMCG00006670 mRNA upstream 136656 13668758 ~ 13726429 (-) True AMCG00006670
AMCG00006673 mRNA upstream 425379 13957481 ~ 13963850 (-) True AMCG00006673
TU139375 other downstream 26147 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 650719 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 650719 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 1388982 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 1504827 12017882 ~ 12024548 (-) False AMCG00006618
TU139625 other upstream 828126 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 1193549 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 1193549 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 2220719 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 4100789 17632891 ~ 17633445 (-) True G112059

Expression Profile