RNA id: AMCG00006662


Basic Information

Item Value
RNA id AMCG00006662
length 6334
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00006662
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13560457 ~ 13573463 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGCCGCAGGTAGGCAGCAGTTCAACATGCCCCCAGCAGACAGACGGGCGGGCTGGCGACTCCGCTGAACTGGGTTACTGTCTGGGTCTGCTCCGGTTACGTCACTTCCCCCCAGAGCCCTGTGTGAGCGTCGAGCAAAGATGGCGACTACACAGCTAACGGATGAGGAGCTTTTCTCGGAGTTGAAGCGATTCGGCTTCACCCCGGGCCCTGTGACGGAGAGCACCCGGCCCGTGTATGTGAAAAAGCTGAAGAAGCTGCGCGacgagcagcagcagcagcggggGACCCGGTCCGGCAAGACGCGCAACAGCGGCGGCATCAACAacagcggcggcggcggcggcacaGCGGCGGCGGGAGCTTCGGGACTCGGAGCCGGGCCAGCCAGCAGTGACGTCACGTACCTGAGCCCCAGCAGCAGCCGGAGCCCCGGCGGCCGCCCGGCTCTCAACGAGAAGCGCTCGGCCGGAGCGGGCAAGCTGGTGCTGGGCTTCAGCTCGGATGAGTCGGACGTGGAGGTCTCGCAGAAAAAATCAGGCCTGCAGCACAGCGGCAGGAGAGACCCAGCCTCTGGCTATCATCATCACCAGCAGCAGGAACCGCAGCAGTTCAGGCCTACACCCACCTCTATCGGCAGGAGTCACCGAGTCGGCGTGAGTAGCAACCCGGCAAGTGCCACCTTAGGGCTGCTGGGCGGCCCGGGAGCGCTCTGGTGGGGGGACAAGGGGAAATCGAGCCTCGGGGTCTCGCACCTCCTGGAGAGCGACCGCAGGGGTTACGGGCAGCCGGACGACGAGGAGGATTACGGCGAGGAGCCGGAGAGGGGCACCAAGGCGCTGAATGGGAGCAGGGCGGTTAATATCTACAAAAGCGGCAAGCCCGGGGGGAACTACTCCGACTCGGACGAGGAGGAGGGCGCAGAGGGGCACCGCGATCGCCGAGCGGGCTCCAGACGAAGCCAGTCTAAACCACTGCCGTCTCCTCGTAAAAGTGCCAGGGGAGGGGAGGGCGGCCGGGAGAGGACGGGAGGCggcataatcataataaatgacAAGCTTGCCGCTGGGAGTCTAGACAtggtgggagagaggggggaggaggaagagcaggaggaggaagagcgcaggaggaggagaggccGGGGGGAGTCGGGGCTGGTAGGCGGCTTGAAGAGTCGAAGCTACTCCAGGAGATCCGGGTTCGTGTCCGGCATCATGGGGGGCAGCGGCGCCGAGGGCAGCCACACCGGCAGCCCCATCGCCTCCAACAACCACCACCATGTCAACAGCAGCGACGGCAGCAGCGGCCGGTTCAGCATCGGGACAAAGACCCGCTACTCGTCTTACAACAGCGCCGCGGCAGCCAGCCCTGCCCGGGCCAACCACTCGAACCACACCGGCTCCAACCATGCCTACAGCAAGACCACGAAGCAGAAGCTGGCGGTGCCCGAGGAGGAGCTGCTCCAGCAGTTTAAACGGGAGGAGGTGTCGGCGACCGGCGGCTTCAGCGCCCATTACCTGTCCATGTTCCTCCTCACCGCCGCCTGTCTGTTTTTCCTCCTGCTGGGGCTGATGTACCTCCGCATGAGGGGGTCCGGGGCTCCCGAGGTGGACGTTGTTAtTAAGAACCATCCTTTTGGGGTTGAATTTGATCATGCTTATGAAGACAGTGAAAAATCAACAATTCTGAAAATTTTGCTTCACCTCCATGATCACCTGGCCAAAATTGCTGggGAACATGACTGTGGTGATCATATCCATCGTGAAAACAGAAGTCTTTCTCTCAGTGAAGCATCTGAGTATTTAATACTTTACAATCCAGAGTATAAGCAGAAGGTTACCACTGCACTTGAATGGATCCTCAAAAGTGAAGATGATGTAGGAATAAggttGATTGGCAGTGATCCTGAGGACAAAGTAATAAACGTTGCACAAATCCAGTACCTGGAGTCCACTCATCCCAACATGTCCTTTATCTGCCGCTTTCGACGTGCGTTTCTCACAGTCATCCACAGGGTTCTGATTTTTATCGTAGGCATTGGTATTGTGTGGGGTGTGCTGTATTACATGAAATATCGCTGGAGgaaagaggaagaagaaacCAGGCAGATGTATGATATGGTTGAAAAGATCATAGATGTCTTAAGAAGCCATAATGAAGCTTGCCAGGAAAACAAAGACTTGCAGGCATACCTGCCCATTCCCCACGTGCGTGACTCACTGGTTCAGCCACAGAACAGGaagaaaatgagaaatgtgTGGGAGAGAGCTGTGAATTTCCTGGCCACAAACGAATCCCGAATTCGAACTGAAACTCAAAGAATTGGAGGAGCGGACTTCCTTGTCTGGAGGTGGACTCAGCCATCCTCAACATGCGATAAAATCTCTATCATGCCGTCCAAAGTGTGGCAGGGCAAAgCTTTCCCACTTGACAGGAGAAACTCTCCACCCAACAGTTTAACACCTTGTTTGAAGATTCGCAACATGTTTGATCCAGTAATGGAAGTTGGAGAGAACTGGGATTTGGCCATTCACGAAGCCATCCTGGAGAAGTGCAGCGACAATGACGGGATTGTTCACATCGCGGTGGACAAGAACTCGCGTGAGggctgtgtgtatgtgaaatGCCTGTCTGCAGAGCATTCTGGAAAAGCTTTCAAGGCATTGCACGGTTCTTGGTTTGATGGAAAACTGGTGACTGTCAAATACCTTCGACTCGATCGATACCACCAACGATTTCCCCAGGCCTTTGGCTGCAACACTCCCCTGAAGCCCTCCAGCAAACACATGAACACAATGTCACACCTGCGGCACCGGACCAGCACAGCCAACTCCCTGGGCTTCTCCTGAGTGTGCCGACTGCTGTCTGGACTGTTCTCACAGCACAAGAGGGCTCTGGTGCAGATGCTgtcttcctctctttttttttttttttttatgtatacattttgtgtattaaacagacgtcttggggggggggggcatcatCAGAAACTCATCTGAGTGCTCCTCGGTCACCGGATTGGATGGCagtttaagatttattaaaacaaacggGGAAAAACGTCAAGACCTCTAAAGTGACCATGAGAATGAGCAGTTACATAGGAGCTTTGCAAGAAGGAACTGGATTTAATTTCTAGATGCCTACAatggatgtattttttttttttgtgaagacTAACAAGAAAACAAGGCTTCCAATTgtaattgcacatttaaaaatttTAATGACCCTCAATACAGTTagcattttttctctttttccctcCTGTCTGTTCTTTTAAACTGGCCCTAGACCCTACTTTAAAAGTTTAGTCAGCCTGTATGTTGAGTAGCTGCATGTGCTGGTTAAAGTATGTCCCTATTTAAGCTTTAAATTGTATCATAATGTggatgtttatttcatacagatgTTTGGGGTTATGTAATCCCGCTCGTAGTTTTAGTGAGAAAAAGGCATGCACAAACACTTAGACAGGGGTGctgtaaatacatgtaaatggtGGTGGCAGTAGCTTATCGTTGAATCGTCTGTATAAAAGCAAATCATAAGCTTTCTTGTCTTATTACCTATcagaaaatagtatttttatttttgactgcATCTGCATTCAGAGGTCAaggaaatcaatatatataagTAACAGTTTTATGTTGGGTTTGCATTCAGGGCCATGTTTCCTGTATGTAAAAGGGTTTCTACACAGTGGATATTTCGCGATGCAGAATTGAGATAAGAGCAATAATTCGAATGGTTCGTCGGCCACAGAGGCTTGTGGGCTTGCATGCCATTCTTTCATTCACTGCCATATAAAGCCACAGGAATCTCCTCGTCCCCTCCATTTATATCCAGATGACCATTTTCAGCGTATATATGTACTATAATTTTATCTAATTTTTAAATCCTCAATATAAATGCTGCAGATctgtgtaatgtaatgctttgttCTTGTAGTCTGATACTTCTGTAACTGAACATTTGCACATCTTATGCAGAACTTGGGGCTTATGGACATTTGCAAAAAATACTTTAGTGAGTTAATCAAACCACCTGCAAATCGCTGGTCGTGGGTTTCCTTTGGTTCAACCCAAGCACTAGAAATCTATCAATTGCTCAGATTTGAATTTTTGTATTGGCAGGTCAGTTGGAATGACTTAATCTCAGCCATTTGAATTTTACTGCCCATCACTTTATTTTTCCCTATTCAATTTCTGGATGAATCTGAATAGTTgccatttatttccattattgAATAAGTGATCAGCAGGACTTGATTTAATGTAAGTTAATGACCCAAACTGACTGCTAAAGTGGATAAAGAACTGAtagtcctttttttatttttgttggatgTGTTATGTTTAGATGGTAAATAAGTCACCATTATATTGTATGACATCCAACATCTCTCATAAACCTAGACCATTTGACATTTAGTATTCCTTGGCCTGAAAAgtgtgaaaacattgtttacaattttttttgaCATGATGACAAAGATAAATAGGCAAAATAAGctggttttagtatttttaaaagtacttttcCTAATTTAAAGGGTTTTCCATTTTGGAATTTATAAACCTCACTTGTAATACACTACAAGGAGGTTTCTGAAAAGAGGGGTATATATATTCATCAAATAAGCTTAGGTTCACTGAATGGTCACCTTTTTGAACATGCAGTGTAGTTAATTCTGGGTGCAGTATTTGCAGCACGAAGTTGTACAGGCAAcgcacattttaaatgtaagaaacCTGATGCACACTCCCCACAGCAGAGAACCTAATTGTGCCTTaactttgtgcttttttttattaatggcaCTGCATTTTCTTGAGAATGTATTTGGGTTTATAAAGTGTTGGAAGGTAAAACTTTTAATCTGTCATTAATTGCACAGAgctaatatgtaaaataattcaacaaggagttttgctgtattttgtgtgcATCATggtaatgtttatatttttatatgtttcaGTCTGACTTTGGTGCACCTGAATTTTTTTATGACCTGTTGCAAGAGTGAATGTAAAAGTTGATGTGGCATTTTTCCAAGGTGGCGCTTGATATTAGCTGCatccttacattttttttgatgtattttatgtaaacactgtacatttatataattgtaatatgtaCTATTATGCAgcttattttccattaaaaatactgttaagTTGACCAATATCCCTACCTGCAAGACAGATGGGAAGGTGTATAATatccagacatttaaaaaaacaaaaaaagttcagatgttttaatgtaatttgtcacTTGTCTTGTAAAAACAACTCTAATTAAAGGTTTATTAGGGGTTTTTAATAGTGAGTCATATGTTTAGACATGTTAAGGAGAAAAGCACTACCTCAAGCCAATGCTGGAGAAATTTGTTCCATACACATGGTTTtacattactgtatatatttagtacCATAAAGCTTCAAATTCAGAATGAAGAAGAGGGTTGATTTAGAAAGCTAAtgactgggaaaaaaaaaaaacctgatgtaaaacttgttttgaaagattacttaatttaaaaatgataattagCTTTATGTGTCCTGCCAATTTGTCACAAATTACTAAAATATTAGAAACAATGAAAACTGTCccttctgtattttaataacacaaattaCTGACTGGTATGCTCCGATAAGTGCTGCATTACTTGGATAATTTAGGATCAGATAATGTACAAATACTTAAGTAGCACTCATTGAGTTTTGTAAAGCAGTAATCTATTAAAAAGGGGGAAGTATTTCGGCcacatatatgcatacattgtTTTGCTACACgcataaagatgtatttattttcaactgcACAAAATACTGTCAGTTAAACCTTACTATTGCTTGTGCACACACCTCTCTGAAACGTGCATTCACGTGTTTTTAATTCATCCGGGGATTGTACGCTTTCCAACACCcatttgaaatgaatgtttCATCCTCTGATAAAATGCAGAAGACAAAGGCTCTATGTGTAATGCAAGTTGAACCCCTTTGACATGCGTTTCCTAAATTCTTGTGACATTATTACATAAATCCGTGTGCGGCAACATAACTTGCTCGGTTCCCAGCCCGCTGCCGATCCTGCTCTTGCTCATATTTGGAGATGGCTTGTGCACAGGAATTTCCCACAATGCCTCAGTCCCGACCTGAGAAGCGCACAGTGGCgttgctttttttcttcctcgACGCTGTCAGGAAATGAGCCGCCGCGGAGCCGGGCATCCTAATCCATATTTCATTAGGCTCTGCTCAGTCCTTTTATCTGCGCACCTTGTCGCAGGTAGGTACGGCC

Function

GO: NA

KEGG:

id description
K19410 LEMD3; inner nuclear membrane protein Man1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139248 lncRNA downstream 600829 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 799621 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 799621 12759571 ~ 12760836 (-) False G111158
TU139067 lncRNA downstream 1430074 12071390 ~ 12130383 (-) False AMCG00006622
TU139038 lncRNA downstream 1505502 12049609 ~ 12054955 (-) False AMCG00006621
TU139505 lncRNA upstream 430290 14003753 ~ 14004141 (-) True G111389
TU139544 lncRNA upstream 562865 14136328 ~ 14137746 (-) True G111421
TU139577 lncRNA upstream 594668 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 609318 14182781 ~ 14299856 (-) False G111451
TU139582 lncRNA upstream 612145 14185608 ~ 14223328 (-) False G111451
AMCG00006664 mRNA downstream 10166 13539598 ~ 13550291 (-) True AMCG00006664
AMCG00006661 mRNA downstream 28355 13529375 ~ 13532102 (-) True AMCG00006661
AMCG00006663 mRNA downstream 57923 13483264 ~ 13502534 (-) False AMCG00006663
AMCG00006660 mRNA downstream 142525 13414739 ~ 13417932 (-) True AMCG00006660
AMCG00006657 mRNA downstream 155442 13392905 ~ 13405015 (-) True AMCG00006657
AMCG00006669 mRNA upstream 36810 13610273 ~ 13616189 (-) True AMCG00006669
AMCG00006670 mRNA upstream 95295 13668758 ~ 13726429 (-) True AMCG00006670
AMCG00006673 mRNA upstream 384018 13957481 ~ 13963850 (-) True AMCG00006673
AMCG00006677 mRNA upstream 527959 14101422 ~ 14103070 (-) True AMCG00006677
AMCG00006675 mRNA upstream 546975 14120438 ~ 14123758 (-) True AMCG00006675
TU139375 other downstream 57229 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 681801 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 681801 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 1420064 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 1535909 12017882 ~ 12024548 (-) False AMCG00006618
TU139625 other upstream 786765 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 1152188 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 1152188 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 2179358 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 4059428 17632891 ~ 17633445 (-) True G112059

Expression Profile