RNA id: AMCG00006669


Basic Information

Item Value
RNA id AMCG00006669
length 2523
RNA type mRNA
GC content 0.41
exon number 7
gene id AMCG00006669
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13610273 ~ 13616189 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAATTACGTGAAAGCAGCTGCGTATGAGGAGCTCTTATCTGTACACTCACCGAATTAAAGGCATttgttcttttgctttttaaaaatgacaacagagAAGTATCCCCGATCGTCCATCGAAGATGATTTTAATTATGGCACCAATGTGGCGTCTGCCAGTGTGCAGATCCGAATGGATTTTCTGCGGAAGGTGTACACAATCCTCTCCATCCAGATCATCCTGACCACCGCCACGGCCGCGCTCTTCATGTACAGCGACACCATCAAGAACTTCTTGCATGCAAGCCCTGCTGTGGTGTTGGTGTCAGCGATTGGCTCCCTGGGTTTCATCTGTGCCCTGGCCATCTACAGACACAGTCACCCTGCCAACCTCTATCTGCTGCTGGGCTTCACTCTGCTGGAGGCCGTCTCTGTTGCCACAGCAGTGACGTTTTATGAGTACACCATCGTGCTCCAGGCCTTTGCTCTCACCGCGGCCGTGTTCGTGGGACTGACGGCGTACACCTTCCAGTCCAGGAGGGACTTCAGTAAATTAGGAGCTGGacTATTTGCCTGCCTATGGATTCTGATCATTGCAAGCTTCATGAGACTGTTCTTCCACAATGAGACGATGGAGCTGGTGTTTGCCGGGGCCGGAGCCCTGCTCTTCTGCGGCTTCATCATCTACGACACCCACCTGCTGATGCACAAGCTGTCCCCCGAGGAGCACATCCTGGCCTCCATCAACCTGTACCTGGACATCCTCAACCTCTTCCTGCACATCCTGCGCATCCTGGACGCAATGAAGAAGAACTAGGCCCTCTGGGAGACCTGCTGTAGCCGCCCCTTCCACAGCCCGGCGATGGCGTCTGCTGATCGGTGGGGATGGTGTGGCTACGGCAGGGCGGCGGCCAGTTCTGTTGGGATCAACATCTGCTGTGAAGAGGTGTTCCTATCTAATCAGACTTCCCCAACTGTCTTATTTTGTACCATAGTCTTGTGTATTTGTTCAGATCTGATCAGTTCCTCcataattgttttcttcttcttctgtattgAATGTTAGACTGTTTGTGCTAAAGTAATTATATGACAGGTTGCAAAAGCAGGGTAAAAGTGtggtaaaatacaataaaattagcCTGTGCATTAAGTTATAGAATGCGTCACTTGGCTGTGAATGTCGTATATAGTgaatattgtgattttttttttttaatacttaacCAGCAAACAAGGTACTATTCCAATGTGTTCAGATATTCAGATTGtgaaaatctaaaatgaagTGCCCTGACTTTCTTTCGTGGTTTAAATCACCATCTTAGACAATAGTGTAATCGTGTGGAGGGTGTTTTTTGAAGGTGATACAGGTTTAGCTAAACAACCAATCTGGACTCTCACCTAAGGGAGTCCAGACCAGGAGTGCCTGAAATCCAGGCTTTGAGGGcaacattttttagttttttttcccccctccatGAGGTTGCAACAAATGAACTGAACTGAGTATTAAAACCAGAATTTTAATGAATTGGTATTAATTACATCTTTCCAAGTTCTTTAGGCACAAAACTTGAAAGATTCAGCCCTTGACCACTGGATTTCAAACACTCGTGGTACACACAGCTTAAAGATGTGCAGATACCAGTTGTCGTATCTGGGAATCTATTTTCTATCTTCTTGGTAAAGGGATCACTGTTTGTTTGTCACATTGTTATTATCTATTATCTGTTGcctgttttattcattatttataattaagaCCGTAAGTGCAATATTAATTCTGATGTGAAAACTAGTGTATATGCACGTAAAGGTGGCAGAACTCCTCATTTATGTGAAACATGTtcatataaaaattaaatttttGTTCCTTGAAATAAATATCCATCGCTTTGAAGGTTTCATTGTCTAGTTTTAttaggctgtgtgtgtttgcatccGAGTTCTGACGGCCTGACAATGAATACCAAAACTGAGGGTTTAATTTTCACTTAGGCTATTCGATATGAACTGCATGATTGACTCTAGTATAATTGGAAAAAATGCCTTTAATCTACAATGCTAGATAAACAGGTCCACTCCACTCCAAATTTAGAAGCTAAAGCTGGTACCATTttgcagcttttgtttttcttctgtatcaAATCATATACAAAcactaaaaaaaacacctgaatgTTATTTAAAGGTCTGTTCCTGTTTGATAAACTTCTGAAaactattattaatgttgttctCTTATTGAGGAAAAGATTCCTTGTGGGTGAAGCCTGACTAATATTATTGATCTGTGGAGCCACTGGAAGTCACAATTATTTGGCATGTTTTCCTCCTATTTGCtacaattgtattttgaatgtaaataaaggagaatattttatgtttagatTGAACCTGCTGTCTCCTGCCTCATATTTCCTCCCATCATTTTATGAATGCATATCTATACACGACTGTATACTTACAAGGAATATACAAATCATAAGTTCTTAATATCACAAAtgttaattatgaattaataaaatacttcatATTGG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139248 lncRNA downstream 650645 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 849437 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 849437 12759571 ~ 12760836 (-) False G111158
TU139067 lncRNA downstream 1479890 12071390 ~ 12130383 (-) False AMCG00006622
TU139038 lncRNA downstream 1555318 12049609 ~ 12054955 (-) False AMCG00006621
TU139505 lncRNA upstream 387564 14003753 ~ 14004141 (-) True G111389
TU139544 lncRNA upstream 520139 14136328 ~ 14137746 (-) True G111421
TU139577 lncRNA upstream 551942 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 566592 14182781 ~ 14299856 (-) False G111451
TU139582 lncRNA upstream 569419 14185608 ~ 14223328 (-) False G111451
AMCG00006662 mRNA downstream 36810 13560457 ~ 13573463 (-) True AMCG00006662
AMCG00006664 mRNA downstream 59982 13539598 ~ 13550291 (-) True AMCG00006664
AMCG00006661 mRNA downstream 78171 13529375 ~ 13532102 (-) True AMCG00006661
AMCG00006663 mRNA downstream 107739 13483264 ~ 13502534 (-) False AMCG00006663
AMCG00006660 mRNA downstream 192341 13414739 ~ 13417932 (-) True AMCG00006660
AMCG00006670 mRNA upstream 52569 13668758 ~ 13726429 (-) True AMCG00006670
AMCG00006673 mRNA upstream 341292 13957481 ~ 13963850 (-) True AMCG00006673
AMCG00006677 mRNA upstream 485233 14101422 ~ 14103070 (-) True AMCG00006677
AMCG00006675 mRNA upstream 504249 14120438 ~ 14123758 (-) True AMCG00006675
AMCG00006676 mRNA upstream 514591 14130780 ~ 14133087 (-) True AMCG00006676
TU139375 other downstream 107045 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 731617 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 731617 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 1469880 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 1585725 12017882 ~ 12024548 (-) False AMCG00006618
TU139625 other upstream 744039 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 1109462 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 1109462 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 2136632 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 4016702 17632891 ~ 17633445 (-) True G112059

Expression Profile