RNA id: AMCG00006671


Basic Information

Item Value
RNA id AMCG00006671
length 5889
RNA type mRNA
GC content 0.49
exon number 15
gene id AMCG00006671
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13906573 ~ 13927886 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCATTGAAAAGCGGCGAACTCTGACCTCTCAGCGAAAGCgcctggagcagcagcagcacttcCACATTTCTGCCTCCTCCGCCTCCCTCTGCAGAGACAAGTGAGTCAGATCTCCATTCAAACACGGCTAAACTCCGAGGGATGAGACTCTACACCCCGACCAGGCGATACAGCTGCTGAACGAAGTACACCGACCCCGTCAACCGAGAGTGGCTGCGCCGATCAACCACGACTTTAGgccagaaagagagacagggcTGGAGAGCGAATCCTGACCGGAGAATACTGACAAGTGTTACCAGCTACTCCACAGACTGCAAACATGGCGAGCGCCTCCTACCACATCTCCAATCTGCTGGAGAAAATGACATCTAGCGACAAGGATTTCAGGTTCATGGCCACCAATGACTTGATGTCAGAGCTCCAGAAGGACTCCATCAAACTGGATGATGACAGCGAGCGCAAAGTGGTTAAGATGATCCTTAAACTTCTGGAGGATAAGAATGGAGAGGTGCAGAACCTGGCTGTCAAATGtCTGGGCCCTCTTGTCAGTAAAGTGAAGGAGTACCAAGTGGAGACTATTGTAGACACTCTGTGTACAAATATGTTGTCAGATAAAGAACAGCTTCGTGACATTTCCAGCATTGGACTGAAGACAGTGATTGGAGAACTCCCTCCAGCCTCTAGTGGTTCTGCCCTGGCTGCTAGTGTTTGTAAAAAAATTACAGGACGTCTCACAAGTGCCATAGCCAAGCAAGAAGATGTCTCTGTTCAATTAGAGGCCTTAGACATTATGGCAGATATGCTATGCagGCAAGGGGGCCTTCTGGTAAACTTCCACCCATCCATTTTGAGCTGCCTACTTCCACAGCTGACTAGCCCACGGCTGGCTGTGAGGAAACGAACCATAATCGCCCTGGGCCATCTTGTAATGAGCTGCGGGAACCTTGTGTTTGTGGACCTCATTGAGCACTTACTCACAGAACTGTCTAAAAACGATTCCATGTCAACCACCAGgacatacatacagtgcatcgCAGCGATcagcaggcaggctggccacaGAATTGGTGAATACCTAGAGAAGATCATTCCTCTGGTGGTTAAGTTCTGTAATATCGATGATGATGAGTTAAGGGAATACTGCATCCAGGCCTTCGAGTCCTTTGTCAGAAGGTGCCCAAAAGAAGTCTACCCACATGTTCCAACTATTATTAGTATCTGTCTTAAGTACTTAACCTATGACCCAAATTACAACTAtgatgatgaggatgaggatgagaaTGCTATGGATGCAGATGGTGCAGATGAAGATTATCAAGGAAGCGACGATGAGTACAGTGACGATGACGATATGAGCTGGAAGGTGCGTCGCGCGGCCGCCAAGTGCCTGGATGCCGTGGTCAGCACGCGGCACGAAATGCTGCCCGAGTTCTACAAGACCGTGTCCCCTGCGCTCATCGCCCGCTTCAAGGAGCGGGAGGAGAACGTCAAGGCGGATGTGTTTCACGCCTACCTGTCCCTGCTGAAGCAGACCCGGCCGGCCCAGAGCTGGCTGTGTGACCCTGACGCCATGGAGCAGGGCGAAACCCCGCTGACTATGCTGCAGAGCCAGGTTCCTATGATTGTGAAAGCCCTTCACAAGCAGATGAAGGAAAAGAGTGTTAAAACTCGTCAGTGTTGCTTCAACATGCTGACTGAGCTGGTGAACGTGTTACCAGGAGCTCTAACTCAGCACATACCCGTGCTGGTTCCAGGTACGAAGCCAGTGATTCTAGTGAGTGATGGCCGAAACGCAATCGGAGGAATCATATTTTCCCTTAATGATAAATCCAGCTCCTCAAATCTCAAGATCGATGCACTGTCCTGCCTCTATGTCATTCTGTGCAACCACACTCCTCAAGTCTTCCACCCCCACGTCCAGGCCCTCGTGCCTCCTGTCGTGGCCTGTGTCGGGGACCCTTTCTATAAGATCACATCCGAGGCGCTGCTTGTGACGCAGCAGCTGGTGAAAGTCATACGACCGCTGGACCAGGGCCCGGCCTTCGACGCCTCTCCGTACATCAAAGACCTCTTCACCTGCACCATCAAGCGGCTCAAGGCGGCCGACATCGACCAGGAGGTGAAGGAGCGCGCCATCTCCTGCATGGGCCAGATCATCTGCAACCTGGGGGACAGCCTGGGCAGCGACCTGCCGAGCACGCTGCAGATCTTCCTGGAGCGGCTGAAGAACGAGATCACCCGGCTGACCACGGTGAAGGCGCTGACGCTGATCGCCGGCTCCCCGCTCAAGATCGACCTACGACCCATCCTCGGGGAGGGTGTGCCCATCCTCGCCTCCTTCCTCAGGAAGAACCAGCGCGCCCTGAAGCTGAGCACGCTGGCTGGCCTGGACATCCTAGTCAAGAACTACAGTGACAGCGTGACTCCGGCCATGATCGACGCCGTGCTGGTGGAGCTGCCTCCTCTGATCAGCGAGAGCGACATGCACGTGTCCCAGATGGCCATCAGCTTCCTCACCACCCTGGCCAAGGTGCACCCGGCCTCGCTCTCCAAGATCAGCGGATCCAGCGGATCCATCCTCACCGAACTCATTTCGCTGGTGCGGTCCCCCTTGCTGCAGGGGGGGGCCCTGAGCGCCATGCTGGAATTCTTCCAGGCTCTGGTGGGCACCGGCACCACCAGCCTCGGGTACATGGACTTGTTGCGAATGTTGACGGGCCCCGTCTACGCGCAGAGCACCGCGCTCACCCACAAGCAGTCTTACTACTCCATTGCCAAATGCGTGGCAGCGCTGACGCGGGCCTGTCCCAAGGAGGGCCCGGCCGTGGTGGGCCAGTTCATCCAAGACGTGAAGAACTCCCGGTCCACCGACTCCATCCGCCTGCTAGCCCTGCTGTCCCTGGGGGAGGTCGGCCACCACATCGACTTGAGCGGCCAGCCCGAGCTGAAGTCAGTCATCCTGGACGCCTTCTCCTCCACCAGCGAGGAGGTGAAGTCGGCGGCGTCCTACGCGCTGGGCAGCATCAGTGTGGGCAACCTGCCCGAGTACCTCCCCTTCGTCCTGCAGGAGATCTCCAGCCAGCCCAAGAGGCAGTACCTGCTGCTGCATTCCCTGAAGGAGATCATCGGCTCGGCCTCTGTCTCCGGCCTCAAGCCCTACGTAGAGAGCGTCTGGACGCTGCTTCTGAAGCACTGCGAATGCACAGAGGAGGGCACCAGGAACGTGGTCGCTGAATGCCTTGGGAAGCTCACCTTAATAGACCCAGAGACATTATTGCCAAGGCTAAAAGGGTACCTTGTGTCAGgCTCATCCTATGCACGTAGCTCAGTGGTGACTGCAGTGAAATTCACCATTTCTGACCACCCTCAGCTTATTGATCCCCTGCTCAAGAATTGCATAGGCGATTTCCTGAAGACATTAGAAGACCCAGACCTTAATGTGCGAAGGGTGGCTCTGGTCACGTTCAACTCCGCGGCACACAACAAACCCTCTCTAATACGGGACCTCCTCGACACTGTTCTTCCACATCTGTACAACGAAACGAAAGTGCGAAAGGAACTCATCAGAGAGGTGGAAATGGGACCTTTCAAGCACACTGTGGACGATGGCCTGGACATCCGGAAGGCAGCGTTCGAGTGCATGTACACACTGCTGGACAGCTGCTTGGACAGACTAGATATTTTCGAATTCCTAAACCATGTTGAAGATGGGTTAAAGGACCATTATGACATCAAGATGCTGACTTTCTTGATGCTAGCCAGACTATCCACGCTTTGTCCCAGTGCAGTTCTGCAGAGGCTGGACAGACTCGTGGAGCCACTGCGTGCTACGTGCACAACAAAGGTGAAAGCCAATTCAGTGAAGCAGGAGTTCGAGAAGCAGGACGAGCTGAAGCGGTCCGCCATGAGAGCAGTAGCAGCACTTCTGACCATTCCCGAGGCAGAGAAGAGCCCCCTGATGAGCGAATTCCAGTCTCAGATCAGCTCCAACCCCGAGCTAGCGGCCATCTTCGAGAGCATCCAGAAGGACTCCTCGTCTGCAAACATGGAGTCCATGGACACtagttaaaatgtttgcttcCAAAACTTGGGGACCCTTTTATTGTTCCATGCATTGCACTGAAACTACAGTTTAGAAAACGaaagaaaacctaaaaacaaaacaaaaaaaggcaaaaattaaaaagaaaacattgtttaagcTCCAATGCTTATCACTATGTTCCTcttttaacataaacaaaaaatggtaTGTTTGGCTATTCATtcattgttgcttttttgtctAGTGTTTAATCCAGAAAGCTGCAGAGTGCACAGGTACTTCGTGCGGCATTCAGAGGCTATCAAGCATTATGTGGTAGCATGAATTGATTGGAAAGGAATGGCATAAAACCTGCTGTCAGCTTTAAGTTAACGATGGGAGATCTATAGATGTATATTGGAGTAGGATCCAATACGTTCTTTGGTTATAACTTGGGATGGGAGAAAGGGGGGAAATAGGATTTAAACTTTATGTAATTTCATGACCatcccttttttttaaatttaatttcctttatcaGTTTCCATGCTGTTCACATccagattgtgtttttgtactATTGAAATATCATCTCTGCCTACTATTTCTTTGTTTGGGCTGTTGGGTTAAATGAGCTCAGATTGGCGACAAAGAAAATCTGCTTTGTAAGATTTATTACATTAAAGTGGTTTGGCACAGTTggtaaaaatgcagaaacaaaaatccTCACGTGATTTCTTCAGGGTTAGCAGAGCGGCATGTgaacttgtattttttgttcagtttcatttttttaattattttttgcatgaGCAAGTATCCCAGTGTGTAGCTTGTCATTTAACAGTATGTACAGTACAACAATACATTTACTGCCACACTCGGTATACCTTTAAGAATTCTTTTCTACTGGTAGTTTGCAGTTAACGATCAGCAGCAGAGTCAAATACAAGACCACAAAACTGATTTCTCTTCAGGAGTTTCAGTTGAGAGGTGGGACCGGACACCTCCCAGAGTTGAACTGTGTATTTTGGCAAAAATGtgaccaatgagaacaaattCTAAAGTAATATCAGGAATAAAGTATAGTTTTTGTGATGCTGAGCTCCAGAGCTATTATACCTATTTGAGCACTTAGAGTTTGCATATAGTTGGTAAGTGATTCAATTGAGAAGGATGTAGTCCTTGCTAAATCTGTAGTTGCACTTTCATTGGTCTTCTCGACAGCTTTGCAAATCACTCACTCGGTCAACAGGTCGGATTAGATTAgtaatatcacattatttgccTTTGGTAATAAAGAAGTATCCTAGTCAAAGTCTGGTATCCAAGTTAGCAGCCTGGATGGaatccagtttttaattttgtgggAGCAAGGTGAGCAGAATTAAACATCAGGGTACTATGATGGATTGAATCAAATGAACAGGCCACTACTTGAGTACTGTGAACTTTATGTTCACCTATAATGGGAATTTACAGACACATCtccaacaaaattaaaatgtttactttggCTTGCTTTTAAATCTTTCTTTGGTCCCCCAGCCAACACtgtatgaaatacatataaagtcTACTGTTTCTGCCCATCTATATTATGAAGTCTGCTTTGGTACTTAGACAATGTGATTATATCTGCATTCTCTCGCCTGTGGCCTTCACAGGTGGCACCTGCTACCTTGTAGTATAAAAAAGTTGAAATGACCGACCACCATTCATCCTTGCATAGCAATGGGAAAGTCAATCTCACTTTAAACTCATTTTCATAAACTTGAATGGAAAGTCTCAAACCAGTTGTATTTTATGGAGAGCTGTAGATGACTGGTGTACTTGATGATCCAAATGATGCAATAAACA

Function

GO: NA

KEGG:

id description
K17263 CAND1, TIP120A; cullin-associated NEDD8-dissociated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139371 lncRNA upstream 404002 13458039 ~ 13502571 (+) True G111272
TU139325 lncRNA upstream 549502 13353956 ~ 13357071 (+) True G111240
TU139223 lncRNA upstream 1059071 12845923 ~ 12847502 (+) True G111161
TU139203 lncRNA upstream 1135648 12759571 ~ 12770925 (+) False G111148
TU139202 lncRNA upstream 1145732 12759571 ~ 12760841 (+) False G111148
TU139484 lncRNA downstream 5780 13933666 ~ 13936254 (+) False AMCG00006672
TU139542 lncRNA downstream 208433 14136319 ~ 14137744 (+) True G111420
TU139569 lncRNA downstream 383866 14311752 ~ 14312024 (+) True G111443
TU139679 lncRNA downstream 700840 14628726 ~ 14632980 (+) True G111531
TU139714 lncRNA downstream 808316 14736202 ~ 14737639 (+) True G111562
AMCG00006667 mRNA upstream 237885 13640139 ~ 13668688 (+) True AMCG00006667
AMCG00006668 mRNA upstream 272119 13622994 ~ 13634454 (+) True AMCG00006668
AMCG00006666 mRNA upstream 297198 13607983 ~ 13609375 (+) True AMCG00006666
AMCG00006665 mRNA upstream 313857 13579593 ~ 13592716 (+) True AMCG00006665
AMCG00006655 mRNA upstream 526742 13364599 ~ 13379831 (+) True AMCG00006655
AMCG00006672 mRNA downstream 7260 13935146 ~ 13939475 (+) True AMCG00006672
AMCG00006674 mRNA downstream 49851 13977737 ~ 13986188 (+) True AMCG00006674
AMCG00006680 mRNA downstream 278235 14206121 ~ 14221251 (+) True AMCG00006680
AMCG00006679 mRNA downstream 299501 14227387 ~ 14251947 (+) True AMCG00006679
AMCG00006686 mRNA downstream 349589 14277475 ~ 14297977 (+) True AMCG00006686
TU139270 other upstream 863125 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 4339222 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 5182507 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 5729787 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 6251379 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 7009611 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 7120450 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 7214979 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 10104227 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 10376893 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile