RNA id: AMCG00006672


Basic Information

Item Value
RNA id AMCG00006672
length 1419
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00006672
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 13933666 ~ 13939475 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGCTGAAATCTCTTCGAGGAGGAGGAACCCCTTATGTCTTGTGGAACAATCTTCTGAGCTTCAGCAGGAGAAGCCAACCAATCCCATGGAGACATATGTTAAGAAGAAGAGAGTGAAATCCCCCCCCAGAGACACCTCCCCCGTGCCCTCTCACTACTCAGAGCCGGTCGTCCTCAGACCCTACAAGGGGACCACCCAGGCCGTGGGTCATCTGCGAGGGGCCGCTGGAGACGATGACGACGTGCTGAGTCTGAAGAGCGTGCAGAGTGTCAGGAGCACAGTGGGGTTCGCTCCAGTCAAGAGATACAGGGGTTTCTCCAGGAGGCTAGCTCCTAAATACAGGCTGCCCCCAGTCTGTGTGGAAGGAGACCCCCGCAGGCCTGATGTAGGTGGATTCTGTCAGCTTCAAAGGGAACGTACTGAAAAAGCAGAGGAGCAGATAAGTGACGTGCCAGGCAGCAGGAATGACAGAGCAGGGGCCCTGGACTTAACTCCCTCGACTAGAATCACCTTTCAAAGCCCAGCGGTACAAGGGCTGTTCCCTGTCACTTCAGACAGCAGCGCCGCAGATTGGAAGGTAGATAAAGTGAAAATCCCTCCACACACAAAGTCTGTCTCATCCAGCACGACTACGTCCAGTTTCAGCTCCTACATTAGCAGAGCCTCCAATAAATCGGGGCGAAGTTCAACAGGCCGCTCCTGCGTGAAGCAATCCGGAGAAAATAACCCCGCTCACCCGGATCACATGGCAAAGCCGAGGGACGACCGCGGAAACGGGCCGGAGAAAAGTGAAATCCTGATGATAGAGCTGGGAATTACTTTTCCAAAAATAGAAAGCAATTTAAGAAGCCGCAATCAGAAACACCCTATGAAGTCGGCGCTGAAGAAATCGTTTGACTGGAAGGCTTACTCACAGAAGATAAGGCTCAGTGAGACCCGGGGAAAGGATGGCGGCGGGGCTGAGATGCTATCGCCAGACAATTTCCACTCTCTGCACACTGCCCCGCCGTGTCCGTGCTCGAAGGCCGTCTGCACCGGCTGCTTTGGACCACAGAGGCTCGCTTCTCTCTTAGAAGAGAGCTGTGATCCATCACCGAATAACAGCCTGCTGGAACCTTTCTCAGGGTTTCGGGAGTATTTGCAGCGGCAGCTTATGCGTTCCCCTGGGCCGTACAGAGCTGGCCAGACCCCGGCAGTGAGACCGGGTGGTCCTGGTACTGGGGTGGCATCCATGCTTAACTATCCTAGCCCGACTGAGAAGGCCCTCCTTCTGTTGCTGCCCCCTCCTCTGCCGGGCTCCCACGGTCCCCTGCCACAACGCACCGTGGAGCTGTCCAGTTCTCACGGAGGAGTGCTGCCCAAAATCACCATGACCTGCCCCACACCCTCACCCAAACCCCCCATGCCAAGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139371 lncRNA upstream 432575 13458039 ~ 13502571 (+) True G111272
TU139325 lncRNA upstream 578075 13353956 ~ 13357071 (+) True G111240
TU139223 lncRNA upstream 1087644 12845923 ~ 12847502 (+) True G111161
TU139203 lncRNA upstream 1164221 12759571 ~ 12770925 (+) False G111148
TU139202 lncRNA upstream 1174305 12759571 ~ 12760841 (+) False G111148
TU139542 lncRNA downstream 196844 14136319 ~ 14137744 (+) True G111420
TU139569 lncRNA downstream 372277 14311752 ~ 14312024 (+) True G111443
TU139679 lncRNA downstream 689251 14628726 ~ 14632980 (+) True G111531
TU139714 lncRNA downstream 796727 14736202 ~ 14737639 (+) True G111562
TU139796 lncRNA downstream 855243 14794718 ~ 14794949 (+) True G111629
AMCG00006671 mRNA upstream 7260 13906573 ~ 13927886 (+) True AMCG00006671
AMCG00006667 mRNA upstream 266458 13640139 ~ 13668688 (+) True AMCG00006667
AMCG00006668 mRNA upstream 300692 13622994 ~ 13634454 (+) True AMCG00006668
AMCG00006666 mRNA upstream 325771 13607983 ~ 13609375 (+) True AMCG00006666
AMCG00006665 mRNA upstream 342430 13579593 ~ 13592716 (+) True AMCG00006665
AMCG00006674 mRNA downstream 38262 13977737 ~ 13986188 (+) True AMCG00006674
AMCG00006680 mRNA downstream 266646 14206121 ~ 14221251 (+) True AMCG00006680
AMCG00006679 mRNA downstream 287912 14227387 ~ 14251947 (+) True AMCG00006679
AMCG00006686 mRNA downstream 338000 14277475 ~ 14297977 (+) True AMCG00006686
AMCG00006682 mRNA downstream 362751 14302226 ~ 14308572 (+) True AMCG00006682
TU139270 other upstream 891698 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 4367795 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 5211080 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 5758360 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 6279952 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 6998022 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 7108861 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 7203390 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 10092638 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 10365304 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile