RNA id: AMCG00006676


Basic Information

Item Value
RNA id AMCG00006676
length 1101
RNA type mRNA
GC content 0.38
exon number 6
gene id AMCG00006676
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14130780 ~ 14133087 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGGGGTAACTAACCAGTACAAGCCTAACAGATTATTGCAATCTTTTCTTGCTGCCTGGACAGACACTGATCTTATCATGAAGtgtgctgttgttgctgtgtttggACTCGTCTGCTGTCTGCTGGGTGGCATCTCTGCTCATAGCATCGgcatgaaacacaaacaaaaggccGGGGTCGTCCTGAGCCCCCCACTGGGCAACGCTCTGCACCGGCAGCGCGTCAACGAACTGGCCAGAGCGGCACAGCAGCTCGATAAAGACACAGAAACCAGACTGCTAAATCTCCCCAAGAACCACACAGATATGACGAACCTGTTCGTTTGCTGCCTGCACGTGAATATTATTGACTTCTACCTCCGGAACGTGCTGAACACAGAGGAGAAGTACCCGCATCTCACTGTGGTGAAACAGGACCTGCACCGCATCAGTACGGACTTGAAAGAGCAAGGCTGTgcggTTACTCATGTCAGGAACCAACAGTATGTCCAAAAATTCAAAGAAGAATACATCAAGCTAGGGACGAACGGGCAGAGAAAAGCAATAGGAGAGGTTGACATCCTCTTTGAGTACCTCTCAAGATtctgcaaagaaaagaaaactcagTAAAGAAGAGGACTTGCTTTTTCTTCATAATGAATTGTCATTAATGAATTGTCCTGTGGTATCGCTATTTATACTtcattgaaagaaagaaaaacaatcttaaCATTATCAtatgaacacattttatattttaaggtaACCCTGAAGCTTTAGTATTAAGCATGagtaaatgcattgtaaaagcattattaaaactattatatGTGTCATCTTTATACAAAGAAAACTTATTTaagttataatttatttgaagagttttaatttaatataaattaaatgtatttatttgttctgtattatattttgttcttaatgTTGAATTGCTTTTATAATACAATGCTTTGCACAAGtagtgtttaatgcactgtaCACATTGTGTTAGAAATACCGGAGATGATAGTGCTAAAGAACACTTGTTCAGGAATGTGCCTTATTGTCACTTATTATGAtcagaatttgttttaattaaataaacaatttgatgTCAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139505 lncRNA downstream 126639 14003753 ~ 14004141 (-) True G111389
TU139248 lncRNA downstream 1171152 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 1369944 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 1369944 12759571 ~ 12760836 (-) False G111158
TU139067 lncRNA downstream 2000397 12071390 ~ 12130383 (-) False AMCG00006622
TU139544 lncRNA upstream 3241 14136328 ~ 14137746 (-) True G111421
TU139577 lncRNA upstream 35044 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 49694 14182781 ~ 14299856 (-) False G111451
TU139582 lncRNA upstream 52521 14185608 ~ 14223328 (-) False G111451
TU139580 lncRNA upstream 83847 14216934 ~ 14223328 (-) True G111451
AMCG00006675 mRNA downstream 7022 14120438 ~ 14123758 (-) True AMCG00006675
AMCG00006677 mRNA downstream 27710 14101422 ~ 14103070 (-) True AMCG00006677
AMCG00006673 mRNA downstream 166930 13957481 ~ 13963850 (-) True AMCG00006673
AMCG00006670 mRNA downstream 404351 13668758 ~ 13726429 (-) True AMCG00006670
AMCG00006669 mRNA downstream 514591 13610273 ~ 13616189 (-) True AMCG00006669
AMCG00006678 mRNA upstream 5978 14139065 ~ 14154332 (-) True AMCG00006678
AMCG00006681 mRNA upstream 119098 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006687 mRNA upstream 232555 14365642 ~ 14366487 (-) True AMCG00006687
AMCG00006690 mRNA upstream 243241 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006695 mRNA upstream 453662 14586749 ~ 14632771 (-) True AMCG00006695
TU139375 other downstream 627552 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1252124 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1252124 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 1990387 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 2106232 12017882 ~ 12024548 (-) False AMCG00006618
TU139625 other upstream 227141 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 592564 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 592564 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1619734 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 3499804 17632891 ~ 17633445 (-) True G112059

Expression Profile