RNA id: AMCG00006677


Basic Information

Item Value
RNA id AMCG00006677
length 438
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00006677
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14101422 ~ 14103070 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATCCAACAATCCACGGCTGGTGGAAGGAGGTGCTATATTTACCAACGTCCTGAAGACATTCGAAAAACAGGAAAGCGAGGAAAAATTACTGCTGAATGAAATACTGAATTTGTATATTGACATCTTTAACAATATGGACAACCCCCCCGAAAACCCGAAATTACGCCAAAGCATTGATCATATAAAGATACGTCTGGGAGACctgaagaaaaatgcattcCTGGATAATGCATCACTCAACCTGAAGAACAAGCTACAGGAGCTGTGGGAAATTAAGGTGAATGACCCAGTTGTGCAGCGCAAAGCTGTGTTTGAACTGAAGCCGGTGTTACTAAAAGCTCTGGATATTCAAAAGAAAGTTCATGAGAAGATGGAAAAAAAGCGAAAGAGAAGGCATGCTAGGCTTTCGCAGAGAAGAACATCATTAATGCATTGA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0006955 immune response biological_process
GO:0009615 response to virus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139505 lncRNA downstream 97281 14003753 ~ 14004141 (-) True G111389
TU139248 lncRNA downstream 1141794 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 1340586 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 1340586 12759571 ~ 12760836 (-) False G111158
TU139067 lncRNA downstream 1971039 12071390 ~ 12130383 (-) False AMCG00006622
TU139544 lncRNA upstream 33258 14136328 ~ 14137746 (-) True G111421
TU139577 lncRNA upstream 65061 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 79711 14182781 ~ 14299856 (-) False G111451
TU139582 lncRNA upstream 82538 14185608 ~ 14223328 (-) False G111451
TU139580 lncRNA upstream 113864 14216934 ~ 14223328 (-) True G111451
AMCG00006673 mRNA downstream 137572 13957481 ~ 13963850 (-) True AMCG00006673
AMCG00006670 mRNA downstream 374993 13668758 ~ 13726429 (-) True AMCG00006670
AMCG00006669 mRNA downstream 485233 13610273 ~ 13616189 (-) True AMCG00006669
AMCG00006662 mRNA downstream 527959 13560457 ~ 13573463 (-) True AMCG00006662
AMCG00006664 mRNA downstream 551131 13539598 ~ 13550291 (-) True AMCG00006664
AMCG00006675 mRNA upstream 17368 14120438 ~ 14123758 (-) True AMCG00006675
AMCG00006676 mRNA upstream 27710 14130780 ~ 14133087 (-) True AMCG00006676
AMCG00006678 mRNA upstream 35995 14139065 ~ 14154332 (-) True AMCG00006678
AMCG00006681 mRNA upstream 149115 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006687 mRNA upstream 262572 14365642 ~ 14366487 (-) True AMCG00006687
TU139375 other downstream 598194 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1222766 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1222766 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 1961029 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 2076874 12017882 ~ 12024548 (-) False AMCG00006618
TU139625 other upstream 257158 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 622581 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 622581 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1649751 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 3529821 17632891 ~ 17633445 (-) True G112059

Expression Profile