RNA id: AMCG00006678


Basic Information

Item Value
RNA id AMCG00006678
length 2151
RNA type mRNA
GC content 0.62
exon number 14
gene id AMCG00006678
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14139065 ~ 14154332 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGTGCGATTTAAGGGGGTCAGTGAGTACCAGAAGAAGTACAAGTGGCAGGACTCTCGCTCGAGAAGTGCGTCTCCAGAGTCCCGGGCTCCTGGGGCCGGCCTGCGCTCCGACCAGCTGGGAATTACTAAGGAGCCCAGTTTTATCTCCAAGAGGAGTGTCCCGTTCTACCGTCCTCAGGTGGCCAGGTCGTTTCAGTGGGCGGAGGGCGCCCCGGCCCTGCGGAGAGAGCGAATCCGCCGGCCTCGGAGCCCCAGCGCTGCGGAGAGCCCTGGCAGGACTCCGACTCCGCTCGCTCCTCGGGTTCCCAAACTCCTCAGATCCCAGTCGGCAGATTCAAGGCCAGAGAGTGCCCCTCCGCCTGCCCCGCCGACAACTGGCAAAAAGATGTCTTCTGTAGCTGCAGAGGAGAGGCCGGGAGCCAAGCTTAATGGAGTGCAGCGGGTCTTGCAGAAGAAAGCTGGTCTGAAACCCACTCTGCTGCAGAACCCGGCCCATCACTCGGAGTACCAGAGGCAGTTCATGTGGAAAGAGCCCCCCGTGAGCTCCCCCCTGCTGGCAGCTGAGCAGGTGATTTACAACAGAAACAGGGACATTCCTCCTTTCAAGTCTGATGCGGTGGTCTTGGAGAGCGAATACAAGAGGAACTTCAAGGGTTCCCCCCCACCCAAGGGGCCGAGGCTGCGCAGAGACGTGGAGCAGAGAGAGGCTGTGCTCTACGAACCAGAGAACGTCCCCCCAGAGAAAACTGCAAAGaaaaagaagaacagaccCCTAGGGCACGGCCCACAGAACAGGGACGCTCAGCCGGGGAAGTGCGGAGAGCCTCAGCGCGCGAGGAAACAGAATCCACACCAGCCCTTCTTCCCTCACCGAGGATATGGGAAACTGAAGTCTGAATACAACTCAAACTTCCGCTCCCCCCTGCTGTACAGGTATAGAGATGGGGGATGGAGAAAATGCTCTACTGCAGGAGGAGAGGTGAAAGAGCTGCGAGAGAAGGCCGAAGCCTACAAGAGGAGAGCCCGGGGCACCCACTTCTCCCGGGAACACCTCAGCCAAGTCCTCTCAGAGCAGAACCGTCTGTGGGAGGTGAGCTCTTCATCCACGGCAACTGAGGAGCCTGTCAGCAGCACCATCAACGCACTGGACCTGGCTAGAGCACAAGGCGTGAGGAGGAGCCCCAGTGTGGTGAGCCCAGCGCCTGCATCTCCCGCAGGCAGTGTGAGGAGCCCAGGTCCCGACCCCGAGCTGGCCGGGCTGCACAGTGCGCCCACCCTGCCGGTGCAGAGGAGGCTGGTCTGGGAGCAGGAGGACCGTGGGGCTGGGGCTGAGGGGGAGGACAGACAACCACAGCCGGAGGAGCAGGACGAGGCCCAGAGCGCCGAGGACGCTGACGAACACAAGAAGGAGAAGCCAGGGAAAGAAGTTAAAGCTGCAGAGTCGGTATCGTCGGCCGGGCCTGGCTCGTTGTCCCCAGAGTCCTCGGAGTGTAGTGCTGAGGCAAGAGGCCGGCTGCCCACACCAAAGATGAAGACCACAGGCTTCAGACTGAGGACACACCATGACCTCACCACCCCTGCCATTGGTGGTGCTATTTTAGTTTCCCCACCGAAACCGACAGCCTCCCCTCAGAGACGGAGTGAGCCCCCCCTGGGGAAGCCCTATTCCCCATACAAGTACCTGTCCAGAGTGGGCTCGCCCCCCAGACACCCCCACAAGGCCGAGGAGAGTCGCTCTCTGCGCTCGCCTCCAGCTGCGGGACTGCAGACCTGCGACCCCATCCCCCTGCGAGAGGACCGCTGGCCTGCAGATCCCCATCCCGAGTCGCAGTCTGCCCCCGCAGCCCCCCCAGCCTCCCAGAAACACCGCCCTGGCCCACAGAACCGCACTCCCACCCCTCTGTCCGCCGGCCAGCCCCCAGCCCGCAGAATCCAGGGCATGCTGAGGGACCCAGAGTTCCAGCACAACGGTAATCTTGGAGGGGCCAGACCTGGGCTGTTCGCCTGCTCATCAAGTGACTCTGTCTCTGACAATgATGAGCGGATGTCACAGATCTCCTCCCGCTCGGCCGCGTCCAGCTCCCGGGCCTCTCAGATCCTGGAGCGGGCGCAGAGGAGGAAGGACCATTTCTGGGGCAAGAGCTGA

Function

GO: NA

KEGG:

id description
K17886 MDM1; nuclear protein MDM1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139544 lncRNA downstream 1319 14136328 ~ 14137746 (-) True G111421
TU139505 lncRNA downstream 134924 14003753 ~ 14004141 (-) True G111389
TU139248 lncRNA downstream 1179437 12954610 ~ 12959628 (-) True G111182
TU139217 lncRNA downstream 1378229 12759571 ~ 12760836 (-) True G111158
TU139218 lncRNA downstream 1378229 12759571 ~ 12760836 (-) False G111158
TU139577 lncRNA upstream 13799 14168131 ~ 14214816 (-) True G111448
TU139581 lncRNA upstream 28449 14182781 ~ 14299856 (-) False G111451
TU139582 lncRNA upstream 31276 14185608 ~ 14223328 (-) False G111451
TU139580 lncRNA upstream 62602 14216934 ~ 14223328 (-) True G111451
TU139599 lncRNA upstream 90270 14244602 ~ 14246174 (-) True G111466
AMCG00006676 mRNA downstream 5978 14130780 ~ 14133087 (-) True AMCG00006676
AMCG00006675 mRNA downstream 15307 14120438 ~ 14123758 (-) True AMCG00006675
AMCG00006677 mRNA downstream 35995 14101422 ~ 14103070 (-) True AMCG00006677
AMCG00006673 mRNA downstream 175215 13957481 ~ 13963850 (-) True AMCG00006673
AMCG00006670 mRNA downstream 412636 13668758 ~ 13726429 (-) True AMCG00006670
AMCG00006681 mRNA upstream 97853 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006687 mRNA upstream 211310 14365642 ~ 14366487 (-) True AMCG00006687
AMCG00006690 mRNA upstream 221996 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006695 mRNA upstream 432417 14586749 ~ 14632771 (-) True AMCG00006695
AMCG00006696 mRNA upstream 490275 14644607 ~ 14665799 (-) True AMCG00006696
TU139375 other downstream 635837 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1260409 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1260409 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 1998672 12137182 ~ 12140393 (-) True AMCG00006625
TU139024 other downstream 2114517 12017882 ~ 12024548 (-) False AMCG00006618
TU139625 other upstream 205896 14360228 ~ 14364422 (-) True G111489
TU139783 other upstream 571319 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 571319 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1598489 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 3478559 17632891 ~ 17633445 (-) True G112059

Expression Profile