RNA id: AMCG00006686


Basic Information

Item Value
RNA id AMCG00006686
length 1872
RNA type mRNA
GC content 0.61
exon number 12
gene id AMCG00006686
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14277475 ~ 14297977 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGTTTGAAACCCCGCCGCCTCCACACCCCCTCGGCCGGGCGGCGGATAGGCaggcggaggaggaggctgAGAGGAAAATGGCCGACGGTGTGGATCACATCGACATTTACGCGGATGTTGGCGAGGAGTTTAACCAGGAGGCTGAGTATAATGTGCACGAGCAAATAGACTTGTACGATGACGTCATTTCACCCTCTGCCAACAATGGCGATGCCCCCGAGGACCGGGACTACATGGACAACCTGCCGCCAGCGGGTGGTGATGATGTGGGCAAGGGGCCACCTACCAACGTGGTCTACACCTACACTGGCAAGAGGATCGCCCTGTATATTGGAAATCTCACATGGTGGACGACAGACGAGgatttgactgatgccattcGGTCAGTGGGAATCAATGACGTCTTGGAGATCAAGTTCTTTGAGAACCGGGCCAATGGCCAGTCGAAGGGGTTTGCCCTGGTGTGCGTCGGATCAGAAGCCTCCTCCAGGAAGCTGATGGACCTGCTGTCGAAAAGGGAACTCCATGGGCAGAACCCCATCGTTACACCCTGTAACAAACAGTCACTGAGTCAGTTTGAAATGCAATCCAGGAAAACCACACAGTCCGGTCAGATGTCCGGTGAAGGGAAAGCTGGCCCCCCTGGAGCGTCTTCTCGTGCCGCGTTCGCTTTGGGTGGCAGAGGGAGGGGACGCTTCCCTGGACCTCCCGGCCCCGGTGGAGACCGCTTCCCTGGCCCTCCCGGTCCCGGTGGGCCGCCACCGCCCTTCCCAGGAGGCCTACAAGGACCCCCACGTCCCCCACCTGGCCCCCCTGGTCCCCCTGGCCCACCTGGCCCTCCCCCCCCTGGGCAGTCTCTTCCTCCACCTCTATCAGGGCCCCCCAACAGAGGCGATCGCCCCCCACCGCCAGTCATGTTCCCAGGCCAACCTTTCGGGCAGCCCCCAATGGGCCCCCTCCCCCCTGGCCCGCCTCCCCCAGTCCCAGGCTATGGCCCCCCACCTGGACCTCCACCGCCACAGCAGggccccccccctcctcccggACCCTTTCCTCCCCGCCCCCCAGGTCCCATCGGACCCCCCATCACCCTGGCACCCCCACCACACATGCCCGGCCCCCCACCTGGCGCCCCTCCCCCAGCCCCACACGTAAACCCTGCCTTCTTCCCTCCCCCTGGAAACAGCAGCATGCCCTCATCAGACAGCCGAGGTCCCCCACCTTCTGATCCCTACGGCCGCCCGCCTCCGTATGACCGAGACTATGGTCCCGCTGGCAGTAATCCGCGACCCTCGCTAATCTGCGGGTACGACCTAGGACCCCGAGACCCGTGGATAAACGAGGGGGTGGTCAATCTGAAAAATGGCGACCAGCACTTGCGCGATTCAAGTGATTCAGGGGAAATGGATGCTGCCAGAACCCCGCTGAGTGAGGCTGAGTTTGAAGAGATCATGAACAGAAATCGCGCCATCTCCAGCAGCGCCATCTCCAGGGCCGTGTCTGACGCCAGTGCAGctGACTATGGCAGTGCAATCGAGACCCTGGTCACTGCCATCTCTCTCATAAAGCAGTCCAAGGTCTCTGCAGATGACAGATGTAAAGTTCTCATCAGTTCTTTACAGGACTGTCTACATGGGATAGAGTCCAAGTCCTATGGCTCTGGATCCAGAAGACGAGAGAGGTCCAGGGAGAGGGACCACAGCCGCTCCAGGGAAAAGAGCCGCCGGCATAAGTCCCGCAGCCGCGACCGCCACGACGACTATTACCGGGAACGCAGCCGGGAGCGCGAGAGACACCGCGACCGAGACAGAGACCGCGACCGCGAGAGGGACCGAGAGAGGGAAATGTTCCATGTTCAGATAATGTCT

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139542 lncRNA upstream 139731 14136319 ~ 14137744 (+) True G111420
TU139484 lncRNA upstream 341221 13933666 ~ 13936254 (+) False AMCG00006672
TU139371 lncRNA upstream 774904 13458039 ~ 13502571 (+) True G111272
TU139325 lncRNA upstream 920404 13353956 ~ 13357071 (+) True G111240
TU139223 lncRNA upstream 1429973 12845923 ~ 12847502 (+) True G111161
TU139569 lncRNA downstream 13775 14311752 ~ 14312024 (+) True G111443
TU139679 lncRNA downstream 330749 14628726 ~ 14632980 (+) True G111531
TU139714 lncRNA downstream 438225 14736202 ~ 14737639 (+) True G111562
TU139796 lncRNA downstream 496741 14794718 ~ 14794949 (+) True G111629
TU139802 lncRNA downstream 511271 14809248 ~ 14811063 (+) True G111635
AMCG00006679 mRNA upstream 25528 14227387 ~ 14251947 (+) True AMCG00006679
AMCG00006680 mRNA upstream 56224 14206121 ~ 14221251 (+) True AMCG00006680
AMCG00006674 mRNA upstream 291287 13977737 ~ 13986188 (+) True AMCG00006674
AMCG00006672 mRNA upstream 338000 13935146 ~ 13939475 (+) True AMCG00006672
AMCG00006671 mRNA upstream 349589 13906573 ~ 13927886 (+) True AMCG00006671
AMCG00006682 mRNA downstream 4249 14302226 ~ 14308572 (+) True AMCG00006682
AMCG00006683 mRNA downstream 23047 14321024 ~ 14352438 (+) True AMCG00006683
AMCG00006684 mRNA downstream 59988 14357965 ~ 14364176 (+) True AMCG00006684
AMCG00006685 mRNA downstream 71836 14369813 ~ 14376801 (+) True AMCG00006685
AMCG00006691 mRNA downstream 96069 14394046 ~ 14395217 (+) True AMCG00006691
TU139270 other upstream 1234027 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 4710124 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 5553409 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 6100689 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 6622281 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 6639520 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 6750359 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 6844888 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 9734136 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 10006802 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile