RNA id: AMCG00006687


Basic Information

Item Value
RNA id AMCG00006687
length 846
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00006687
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14365642 ~ 14366487 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAAACACAATCCGAGGAGCCATCGCCTTCGTTCCCTCTGAGAAGTGCCAGAGATTCCTGGTGGGGGAGCTGAAGGAGATGCCCATGGACCGCATGGTGGACCTCAGCGGGAGGCAGCTGCGGAGGGTCCCCCTATCAGTGTGCTGCTTCGGCGAGCTGGTCAAGCTCTACCTGAGCGACAACAACCTGCGCAGCCTCCCCCCGGAGCTGGAGAGCCTGCACAAGCTCCAGATCCTGGCGCTGGACTTCAACCTCTTTGGAGAGCTGCCACTGGTGGTGTGCAGTCTCAGGCAGCTCAACATCCTCTACCTGGGAAACAACCGGCTGCACGCCCTGCCCTGGGAGCTGAGCCTGCTCACCGAGTTGAAGACGCTGTGGATCGAGACCAACTACTTCACCGAGTTCCCCGAGGTCATCTGCCAGCTGAGCAACCTCAAGACCCTCCACATGGGCTACAACCAGCTCCACTCCCTGCCTGAAGAGCTGTGCGGCCTGCAGGAGCTGCGCAGCATCTGGCTCTCCGGCAACCAGCTGACCGAGTTTCCCGACGTGCTGCTGGAGATGCACTTCCTGGACGTGATCGACGTCGACAGGAACAAGATCCGCCGTTTCCCCAGCCTGGTGCACCTGAAGGGCCTCAAGCTGGTCATCTATGACCACAACCCCTGCGTCAACGCCCCCGCCGTGTCAGAGGGGGCCCGGAGAGTGGGCCGCTGGGCCAACAACAAAGAGGAGGTCACAGAGGAGAAAGGGAAGAGAGCCGAGCCACCGCCTGCGCCAACTGAAACCGAGGAGCCCCCTACTGAGATGCAGGCCGAGCCATGCCAAGAACCTGTGGCCTAG

Function

GO:

id name namespace
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139614 lncRNA downstream 53618 14311727 ~ 14312024 (-) True G111478
TU139581 lncRNA downstream 65786 14182781 ~ 14299856 (-) False G111451
TU139585 lncRNA downstream 70093 14290467 ~ 14295549 (-) True G111452
TU139599 lncRNA downstream 119468 14244602 ~ 14246174 (-) True G111466
TU139582 lncRNA downstream 142314 14185608 ~ 14223328 (-) False G111451
TU139784 lncRNA upstream 345530 14712017 ~ 14713959 (-) True G111621
TU139789 lncRNA upstream 362484 14728971 ~ 14730469 (-) True G111622
TU139788 lncRNA upstream 363213 14729700 ~ 14730469 (-) False G111622
TU139793 lncRNA upstream 366683 14733170 ~ 14734171 (-) True G111626
TU139797 lncRNA upstream 428231 14794718 ~ 14794949 (-) True G111630
AMCG00006681 mRNA downstream 94951 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006678 mRNA downstream 211310 14139065 ~ 14154332 (-) True AMCG00006678
AMCG00006676 mRNA downstream 232555 14130780 ~ 14133087 (-) True AMCG00006676
AMCG00006675 mRNA downstream 241884 14120438 ~ 14123758 (-) True AMCG00006675
AMCG00006677 mRNA downstream 262572 14101422 ~ 14103070 (-) True AMCG00006677
AMCG00006690 mRNA upstream 9841 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006695 mRNA upstream 220262 14586749 ~ 14632771 (-) True AMCG00006695
AMCG00006696 mRNA upstream 278120 14644607 ~ 14665799 (-) True AMCG00006696
AMCG00006698 mRNA upstream 442374 14808861 ~ 14818516 (-) True AMCG00006698
AMCG00006702 mRNA upstream 539061 14905548 ~ 14927342 (-) True AMCG00006702
TU139625 other downstream 1220 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 862414 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1486986 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1486986 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 2225249 12137182 ~ 12140393 (-) True AMCG00006625
TU139783 other upstream 359164 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 359164 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1386334 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 3266404 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 3972783 18339270 ~ 18341210 (-) False AMCG00006754

Expression Profile