RNA id: AMCG00006690


Basic Information

Item Value
RNA id AMCG00006690
length 3013
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00006690
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14376328 ~ 14388386 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTGAAGGATCCTCAGAGGGGGACGCTGTGCTCAGTGCAGAGGAATCCCTGGAGGCTGCTGTGCTGTTTGCAGGCTCCAATGTGGACAGCAAGGTCTCTGTGGACAGCGGCTGCTTGCTGGAAACAGGAGAGATCCCCCACTGCGCCAGCGAAGCACCATGTCTGCAGACACTGGAGCTCACCGTCTGGGAGATGGAGGTTCCCCAGcatcTGGTTGGGCAGTTCCTCGGGGCGCACTGGAGACACATGCAATGCCTGAAGTTGTCTTTGGGTGTTTCCATAGTCGACATCTCAAGAGACACCTCCCGAGACTTCCAGATCTGCCACGTCGAAGGTTTCTATGTGACACTGGTGGTGAACCGGTGGTGGAACCAGTTTGTGAACCTGCCATGGCCCGACCGCCTGATGATGCTGATCTCCAGCTGTGTGCAGGGCCGCGACGAGCAGGGGCGGCTCCTGCGCCGGACACTGATGCGTTACGTCAACCTCACCTCCCTGCTCATCTTCCGCTCCGTCAGCACAGCTGTCTGCAAGCGCTTCCCAACCATGGACCATGTGGTCGAAGCAGGTTTCATGACGGCAGAGGAAAGAAAGATCTTTGAAAACCTCAAGTCTCCTCACTTGAAGTACTGGGTCCCAGTTGTGTGGTTCGTGAACCTGGCATCCAAGGCCAGGAAGGAGGGCCGGATACAGGACAGTGTGGACCTGCAGACCATCTTGAACGAAATTAACAAGTTTCGCACTTGGTGTTCCACCCTTTTTGGATATGACTGGGTGGGGATTCCACTCGTCTACACACAGGTAGTGACTCTGGCCGTCTACACCTTCTTCTGTGGCTGCTTGATTGGACGCCAGTTCCTGGACCCCGCTCAGGGCTACCCCGGCCACGATCTGGACCTGTACGTGCCGGTCTTCACCCTGCTGCAGTTCTTCTTCTACTCCGGTTGGCTCAAGGTGGCCGAGCAGCTTATTAACCCGTTCGGGGAGGATGATGACGATTTTGAGGCTAACTGGTGCATAGACAGAAACCTGCAGGTTTCCCTGATGGCTGTGGATGAAATGCACATGAACATCCCTCACATGACCAAGGACATCTACTGGAACGACTCAGATGTCCGGCCTCCCTACACCATCGCTGCGGCCGACTACTGCATCCCGTCCTTCCTGGGCTCCACAACAGACATGGGGCTATCCGAGATCGAGCTGCTGAGATACGAGGACTTTGTGCCAGAGGAGTTAAAATTCCGGCGTCGAGAGTCGGTCCGGGACCTTGTCCGCCGGCTGTTCAGCGTTCAGGAGAACCCCAACACCGCCCGCGGACGGGCCTCCTTCAAGCGCCACAGCAGCGAGTACTCCAGTGTCTTCTACCCTTTACCCACCGACCACTGGCCCTCCCACGGCCCAGAGGAGCTGACCAACAAGGTCCCACCAGACCACCGCTTAAAACATCCCTCCCAACATCTGTCCACACTGCAAGAGGTCAGCACCCAATCAACACCCAGCACCCATCCCCCCTCCCCTGTCTTTGAGGAAGTACCCATGGTGGTGGTCACCCCACCCCAAGCCAGCAGAGGAGACGGGCAGCAAGGCAACCTAAACACCCACAGCAACATGGCGGGGGGAGCAGACACACAAACCGGCACTGCTCAGGACACGTCCCAGTTCACAGAGAAGGACCCTGCAGCAGCTAGGGGACAGCCCTCCCCAGCAGAAGCACAAGGACCAAAAGAGCAGGGATCTAGCACACACCGGTGGAGCGTTCCGGCAGCCAGGAAGAAGATGAGGAGTCGTCAGTTCTCCCACCAAGGCTTCAAGGGCTCTCTGTGCAGCCTGCCCAGTCCCAAGGGCCCGGGAGGAAGGAAATGCCTAACCAGGACCCCCAGTACCCCTGCAGGACCGATCCCGAGCAGCAGATTCCAGAGGACTAGTAGCACTGGCCCAGACAGCACAGAGGAACCACGAGAAACTGACATCTTAGAGTCCAACAGCGAGGAGAAAGTATGGAGTCATGGCACTGGAGGACAGGAGTCTCTGAACTCATAGTAATCAGACCCCGTTTACAAAGAAGGCCAGCCATCTAATAAGGCCTCATTTGTAAAAGTAGGTAAGCAAATTAACACTAatacatacacagtgttctCATAAGGGAAACAAAAACTTAAGCATcagtgtattaaataaaaaccatcCAAATATTTCTGGTAAATTGCCATGGACATCTCTATTGCAGAAAACAGGAACAATTCCTTAAATtgtggaaaatattaaaacaaactaaaaagaaactaatgaaatgaaaagtaagAATTTTAAATTagtcatgtaaaataaatgtaaccacaCTTCAAGAACAAAACGATCCAATTGGGTCTTGCTATTCAATCACACAATATACATAGTTGTAGATTAGATCCATTTAATTAACCAAAAACACATGCGTATCTCAGTTTCGAAGAGGTTTTATTTCTCCTGCTGTAGTTTCACAGTGGCAGTCATCACAGGTTATGGAGAGAGTCTTTCTCCATTGGCCGGTCTACAGCGCCACTGGACTGCCATGCCAGGCGCGTGCAAACCCTACCCTGTCGTTGCCCCGGTCAAAGATACTGTAGAACTCAGAGATGAAGACGTCCCCCAGGATCCAGAGGGGGCCGGAGGCAGTGTGGATGTCCACGGCCTGGAATCCACTGTAGCAGATGTGCTTGCCTCCGTCCATTTCCTTAAAAGAGAAGATCATTGATGGATTCATTGACAGTCAGGTCATTTCTAGTATGCACACTATGGACACAGAATGCCACCATCCTATAAACAGGAGATCAAGTGCTCAATTCAACCTacaaattgaatgtaatttggTATTTATAGAGGGTATTTATAAGATTAGTAGGCATAATCAAACAACCAGTGTAAAAACTTTACATTTCAAGACCATTTCAATTGGAACATAGTAGACCTGGAATTGTGTGAGGAGGGTGAACGGATtctaaataaaagcatttgtttgtacatgaga

Function

GO: NA

KEGG:

id description
K13880 BEST3, VMD2L3; bestrophin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139617 lncRNA downstream 2018 14336701 ~ 14374310 (-) True G111481
TU139614 lncRNA downstream 64304 14311727 ~ 14312024 (-) True G111478
TU139585 lncRNA downstream 80779 14290467 ~ 14295549 (-) True G111452
TU139599 lncRNA downstream 130154 14244602 ~ 14246174 (-) True G111466
TU139582 lncRNA downstream 153000 14185608 ~ 14223328 (-) False G111451
TU139784 lncRNA upstream 323631 14712017 ~ 14713959 (-) True G111621
TU139789 lncRNA upstream 340585 14728971 ~ 14730469 (-) True G111622
TU139788 lncRNA upstream 341314 14729700 ~ 14730469 (-) False G111622
TU139793 lncRNA upstream 344784 14733170 ~ 14734171 (-) True G111626
TU139797 lncRNA upstream 406332 14794718 ~ 14794949 (-) True G111630
AMCG00006687 mRNA downstream 9841 14365642 ~ 14366487 (-) True AMCG00006687
AMCG00006681 mRNA downstream 105637 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006678 mRNA downstream 221996 14139065 ~ 14154332 (-) True AMCG00006678
AMCG00006676 mRNA downstream 243241 14130780 ~ 14133087 (-) True AMCG00006676
AMCG00006675 mRNA downstream 252570 14120438 ~ 14123758 (-) True AMCG00006675
AMCG00006695 mRNA upstream 198363 14586749 ~ 14632771 (-) True AMCG00006695
AMCG00006696 mRNA upstream 256221 14644607 ~ 14665799 (-) True AMCG00006696
AMCG00006698 mRNA upstream 420475 14808861 ~ 14818516 (-) True AMCG00006698
AMCG00006702 mRNA upstream 517162 14905548 ~ 14927342 (-) True AMCG00006702
AMCG00006706 mRNA upstream 1176213 15564599 ~ 15574755 (-) True AMCG00006706
TU139625 other downstream 11906 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 873100 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1497672 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1497672 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 2235935 12137182 ~ 12140393 (-) True AMCG00006625
TU139783 other upstream 337265 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 337265 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1364435 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 3244505 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 3950884 18339270 ~ 18341210 (-) False AMCG00006754

Expression Profile