RNA id: AMCG00006692


Basic Information

Item Value
RNA id AMCG00006692
length 2875
RNA type mRNA
GC content 0.44
exon number 15
gene id AMCG00006692
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14514304 ~ 14541346 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTTGCAGGTGACAAACAGCATGTTTAGTGCTACAAGAAAGAAGTTTGTAGAGGGAGTCGAAAGTGACTACCCTGATGAAAGCATGTACTACAGCCAGCCGTCGATGTTTCCACATCGATCGGAAAAAGACATGCTGGCATCGCCATCACCATCAACGTCAGGTCAATTGTCTCAGCTTGGTGCAAGTTTATATGGGCCACAAAGTGCACTAGGCTTTCCAATGAGGGGGATGAGCAACAATAACCCTCCGTTAAATCGCAGCTTATCACAAGGTACCCAGTTACCGAGCCATGTAACCCCAACGACAGGTGTACCGACAATGTCTCTCCATACTCCACCCTCACCGAGCAGCATGGCCATTTTTGAAGTTACACATGAACAAGGGACATTTGATAGTCCTCTGGCCTGTTACTCTCTAGACATGATCAACCTAATCAGGGCGAGCTGCCAAGCCCAGGGAGATGGGGTTCAAGCCAGGGGTATCCTGCCTCTGAACACGAGGAACATAATGAACCACTCCCAGGTTGGCCAGGGGATTGGCATGTCTGGCAGGACCAACAGCATGAGCAGTTCAGGGTTAGGCAGTCCAAACAGAAGCTCCCCCAGCATAATATGTATGCCAAAGCAACAACCATCTCGGCAGCCCTTTACCATTAACAGTATGTCAGGATTTGGAATGAACAGGAACCAGGCGTTTGGGATGAACAACTCGTTATCAAGCAACATTTTCAATGGAACAGACGGAAGTGAAAACGTGACGGGACTGGATCTCTCCGACTTCCCAGCATTAGCAGACAGAAATAGAAGGGAAGGAAGCGGAAACCCAACTCCGTTACTAAATCCTTTGGCTGGAAGGGCTCCCTATGTTGGGATGGTAACGAAACCTTCAAGCGAACAGTCCCAAGACTTCTCCATCCATAACGAGGATTTTCCTGCACTGCCTGGCTCCAGCTATAAGGACCCTACATCAAGTAACGATGACAGTAAATCCAATTTAAACTCATCGGGCAAGAATGTATCTAGTACAGATGGGCCTAAATTCCCCGGAGACAAAAGTTCAACAGCGCAAAACAACAACCAGCAGAAGAAAGGGATTCAGGTGTTACCCGACGGTCGGGTGACAAATATTCCTTCAGGAATGGTAACGGACCAGTTCGGAATGATTGGGTTGTTAACATTTATCCGAGCGGCGGAGACGGACCCAGGAATGGTACATCTGGCGTTAGGAAGTGACTTGACAACACTAGGACTCAATCTCAACTCTCCTGAAAATCTCTACCCCAAATTTGCATCGCCCTGGGCATCAGCACCTTGCCGACCTCAAGATATTGACTTCCATGTTCCATCTGAGTATTTAACGAACATTCACATAAGGGATAAGCTGGCTGCAATAAAACTGTCGCGGTATGGAGAAGACCTGCTATTCTACTTGTACTACATGAACGGAGGAGACCTCTTACAACTTCTAGCAGCAGTAGAGCTCTTCAACCGGGACTGGAGGTACCACAAAGAAGAGAGAGTCTGGATCACAAGGGCACCGGGGATGGAGCCAACAATAAAGACCAACACTTACGAGAGGGGGACATACTACTTCTTTGATTGTCTTAACTGGAGGAAGGTAGCTAAGgagTTTCACCTGGAATACGACAAACTAGAAGAGAGGCCTCATGTGCCATCAACCTTCAACTATAACCCAGCTCAGCAAGCCTTCTAAAAGACTTCCCTGTTCATGGGGTATGGCTGTCTCAGCACATTACTCACTGAAACTGCAGAAACTGATGTTGCTCAGGCATCCTGGTTTTTATTCCTTGAGGATCTGGCAATTGACTTAGGCGGAGGGTTCACCATTTCGAGGTCCTGCCTTACTAATTATGTGCTGCCCAAAACCTAAgcttattcttttatttttactccttttttttttttctttcatttttttttattattttttttttagtttgagCAGGGTCTGAATTTTGTTTACGCCTCTTTTCAGACGCCCGTCTGTTCAAAGGCAGGaacactgacaaagaaaataataggcTTATGCTTAATTTTCCAAAGTGTTAAAACCGAAACGATACACCATACaccaacagaaaataaataaatccaagaACAATATCAACAAGACAGGAAAAATGCAATGTTCATTGTAGCACTAttggtaataaaaaaacacaaaaattgtttgtgcattttttatgtGAAGATACTTCTCGTATTTTGTTTGGAAGGATAAGCAGCCTGTACACTTTTccctccccccttttttttttatttcctccatCTGCCCTCTACCCTCCCCTTCATTTCCCTCTCCtatcccaccccccacccctgtcCCTTCCCTGCTTTTCTTGAAGGGCGTTTTCTGCCTAGCTTAATACGAGACTGTTTAAGTGAACGTTATTGCCACAACCTCTGGACAGTCTTCCAGGGTTGTGAATTACTGAGCTTCATCGTTCCAGAATGAGCAAAACACTGTCCAGTCTTTGTTACGATTTTGTAATAAacgtgtacatttttttaatttttggacATCACATGAATAAAGATATGTATGTAcgaatgtgtatatattatatatatatgacatctATTTTGGAAAATACTTGCCCTGCTGTACCTCATTTTTAGGAGGTGTGCATGGATGCAATACATGGAAACAGGACATTCTGGAACTGCTGGTCTGGGGACCACGGTGTCGCCCtgtgcacttaaaaaaacaaaacaaaaaagggccAGATTTTCAGCAACCAAGGACATCCATACCCAAGTGAACACGACGGGATTCGAGGAAGAGAACTGAGGCATTTCACTCTGGCTGTTTGCACAGCAGCATttcataggaaaaaaaaaacaaataaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12605 CNOT2, NOT2; CCR4-NOT transcription complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139569 lncRNA upstream 202280 14311752 ~ 14312024 (+) True G111443
TU139542 lncRNA upstream 376560 14136319 ~ 14137744 (+) True G111420
TU139484 lncRNA upstream 578050 13933666 ~ 13936254 (+) False AMCG00006672
TU139371 lncRNA upstream 1011733 13458039 ~ 13502571 (+) True G111272
TU139325 lncRNA upstream 1157233 13353956 ~ 13357071 (+) True G111240
TU139679 lncRNA downstream 87380 14628726 ~ 14632980 (+) True G111531
TU139714 lncRNA downstream 194856 14736202 ~ 14737639 (+) True G111562
TU139796 lncRNA downstream 253372 14794718 ~ 14794949 (+) True G111629
TU139802 lncRNA downstream 267902 14809248 ~ 14811063 (+) True G111635
TU139812 lncRNA downstream 352453 14893799 ~ 14895938 (+) True G111645
AMCG00006688 mRNA upstream 48418 14450266 ~ 14465886 (+) True AMCG00006688
AMCG00006689 mRNA upstream 72668 14425769 ~ 14441636 (+) True AMCG00006689
AMCG00006691 mRNA upstream 119087 14394046 ~ 14395217 (+) True AMCG00006691
AMCG00006685 mRNA upstream 137503 14369813 ~ 14376801 (+) True AMCG00006685
AMCG00006684 mRNA upstream 150128 14357965 ~ 14364176 (+) True AMCG00006684
AMCG00006693 mRNA downstream 7997 14549343 ~ 14573412 (+) True AMCG00006693
AMCG00006694 mRNA downstream 33335 14574681 ~ 14576272 (+) True AMCG00006694
AMCG00006697 mRNA downstream 230105 14771451 ~ 14780474 (+) True AMCG00006697
AMCG00006701 mRNA downstream 322468 14863814 ~ 14891825 (+) True AMCG00006701
AMCG00006700 mRNA downstream 389677 14931023 ~ 14937252 (+) True AMCG00006700
TU139270 other upstream 1470856 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 4946953 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 5790238 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 6337518 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 6859110 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 6396151 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 6506990 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 6601519 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 9490767 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 9763433 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047927 False 2233 mRNA 0.49 15 NC_007136.7 28678851 ~ 28713510 (+)
grasscarp (Ctenopharyngodon idella) CI01000193_00057810_00059878.mRNA True 942 mRNA 0.46 6 CI01000193 57649 ~ 59936 (+)