RNA id: AMCG00006695


Basic Information

Item Value
RNA id AMCG00006695
length 10010
RNA type mRNA
GC content 0.49
exon number 33
gene id AMCG00006695
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14586749 ~ 14632771 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTTttatattgtattcaatgtggtttattttattatagagGGGTTCCTAATTGCGCACATGACGAAAGGATTCTGTCTCTCCACTCAGAAGAAGGTGGTAGTTGTAGTCAGATGCAATGTATCCAATCCTGATCAGCAATGGAGATGGACAAGAGACATGAAACTTCTCCACATCCACTCGTCCGGGTGTCTGTGGGTTAACACCAGCAGGGCCCTACCTGCCCACGCTCGCTTGGCCACCATTGACTCCTGCTCCACAGCCCCTGCCTGGAAGTGCTACGACGAGATAGGGGCTTTTGGGGTGATGGACCGGCCACTGTACCTGAGGAAACAGGGCAGGCGCGTAGCGGTGAAGCAGGATCAGAGGCATTCAAACTGGACCAAGTACGAAGTGGACCCGGGAGGAATACTTGTGAAAGGGCATTTATGCTCAAAGGATGCATCCACCACACCAGCTCTTCCTGAAAGCACAGCTGTCACACAAAGAGTTACTGCCCCTCAAACCATTGTTTGTACTGAGATActtacaacaacacaacacaaccttAAAGTGACCAGTCCTGAAACAGAGCCATTACCTACGACAACTTTGACTACCACTTCAGAACCTACCTGGCCAGTGACTGACTCTACTGCCATCACAACTGAGCAGTACGGCACCACCGAGGCTGTGAAGTGTACTGTAAACCTGACTGAGGCCACTGTCTTCAATGGCAGTATTGTGTTAAAATGGACAACTCCTGGAGAAGCGTGCAATTTCAGTGTCATTCACACACTGGACCGCTCGCCAGCGGGGGACTGTGTCCGACAGGAGCCGCACAGCCGCCAGTACCAGTGCGTCCTCAGGGACCTGCCGCCCGGCGAGGTGCGCCACCTGGGCATCGTGTCCGCCGCGGACCGGGAGCAGCGCAACGTGTCCCTGCAGACGGACCCCCGGGCGCCTGCGAGGATCGAGGTCCTGCAGGAGAGGAGCGGTCGCAGCAGCCTGCAGGTGGCATGGCCTCGGTCCCTGGGCAGAGTGGACCTCTATGAAGTGGTTTTGCGAGACCCAGACACTGGAGAGACATGGAGGACCCAAATTGCAGGGAGCGCCTCCACCCAGGCTAGCTTTTCCAACCTGACCCCGGGCAACCTGTACACGCTTTCTGGATCCTCAGACAGCCTGGAGGTGTCTTGGAGGGCAGGCTCTGGGAAGGTGATGAAATACAGGCTGCTACTGCGAGACAGCGAGAGGCTCCTTCAAAACCTCACCCTGGAGAACAGTTCCACCAACCATTTTCTGAACAGCCTAATCCCAGGACACCTCTACAATGTCACTGTGGTCACAGAGGTGCGGGGGCTGCGAAGTTATAGCTCCCAACAGGCCCGCACAGCTCCAGCCAAAGTGACAGATCTGAAAGTGCTGAACAATGGCAGCCAGGACAGCCTCCGGGTCACATGGAGCCGAGCCATGGGTGATGTGGACTCTTACACCCTCACCCTGTCCGCACTCTCGTCTCCCCTTCCAGAGAGATCACTGCCAGGAAGTGCCACCGAACTCCTCTTTAAAGATCTGATGCCTGGACGGCTTTATCATGTGTCTGTCAGCACCAGGTCTGGAAAGCtacaaaatgaaacacaggCTTTAGGTAGAACAGTTCCTGGCAAAGTCTCTCAGTTGGCGATGAATGAACTGGGGAAGCAAAACAGTCTGAGGATGACGTGGGCGCCCCCTAGGGGAGACTGGGAGCACTACCGCATCCTTCTACTCAACAACTCCATTCCCATAGTGAACAGGACAGTAGAGAAGCAGAGCAAGGAGTTCACCTTCACAAACCTGGGCCTCATCCCAGGACGCCTCTATCGGGCCGCAGTGATTGTACGGAGTGGAGAGCTGAGCAGCAGCACATACTGTGAAGGCAGAACAGCTCCTCAGTCAGTAGTGCAGCTCCATGTCCGGCACATGGACGAGACCTCTCTCAGTGTGGGCTGGACCAACCCGCTGTCCGAGTGGGATCATTATATCATCCAACTGAAGCACAAGGGCACGACGGTTCAAGAACGGAGACTGGAGGCCGATGTTAAAGAGTATAGGTTTAACGACCTGGTACCTGGACGGCAGTACTCCATCACTGTAACAACCAGCAGTGGGAAACTCAGTTCCTCAGCCTCCGTGACAGGAAGGACTGTTCCAGCGGAAGTCACCCAGCTGAAAGTCAGTAACCAGGGTAAAACGGACAGTCTGCACACCACCTGGGAGCGGGCCGCCGGGGAGGTCAGCTCCTACCGCTTTCTTCTTATCCACGACAGCATCGTCATCAAGAATGAGAGCGTGTCAGGGAACACGAGCGCCTACAGCTTCCACGGCCTCAGACCCGGTGCGCTGTACCGGGTGGTGGTCATCACCGTCAGCGGGGGCGTGTCGTCCCGGCAGACGGTCGCGTCGGGACAGACAGTTCCTTCAGCTGTGGGAGAGATCACAGTCAGCAACAACGGACGCACAGATTTCCTCAGTGTGTCATGGCGGCCGGTCGTCGGAGATGTGGACAGCTACCTGGTGACACTGAGTGACCACGAGAAGGTCGTCCACACCTTGGCAGTGTCCAAATCCAGCACAGAGTGTGTCTTCAACTCCCTTGTGTCGGGCCGCCTGTACAATATCTCCATCACCACACGCAGCGGAGTGTATGAGAACCACACCTCCGTACAGGAGCGAACACAGCCGTCAAGTGTTCAGAATCCCACAGCCATTCACTCGGCAAGGGACTACTACCTGAAAGTGTACTGGCAGGATGCAGAGGGAGACTTCGACTATTACCAAGTGGTCATCAAACACAGCAACGACTTTAACCAAAACAAGACGGTGCCCAAGACACAGACCGAGTGTGTCTTCAATGGACTGGTCCCTGGGAGGCTGTACACCGTGACTGTCAGTACAAAAAGTGGAAAGTATGAGTCAAGCGTGTCAACAGATGGCAGAACATTCCCGGCCGCCGTCACAAACCTGACTCTGGCCGACATGAGCACAAAGGAGCTGCACGTGACCTGGTCCTCCGCACTGGGCGACGTCGACCACTACGAGATTCAGCTCCTCTTCAACGACATGAGGGTGATCCCACCCATTACCCTGAGCAACAGAGTGCTGGAGTACCGCTTCACCTCCCTCAAGCCAGGACGGCTCTACAAGATGGTCGTGTCCACCTTCAGCGGACCTAACCAGCAGGCGCAGTTCATAGAAGGGAGGACAGTGCCTAGCACGGTGAAGAACATTCACATCGCCAACAACGGTAAAACGGACCAGCTGAAGATCACCTGGACGCCAGGGGATGGGGACGTCGACAGCTATTCGGTGTCAATCTCCCAACAGGGCCGTGTGCTGAACATGCACTCCGTACCCAAGCAGGTGTATGAGTACAGCTTCCAGGACCTACAGCCAGGCCAGCTGTACAGCATTACGGTGCAGTCCAACAGCGGCACCCTCCACAACAACAGCACCGCCAGCAGGCGCACAGTTCCAGCCTCAGTGACAGGTCTGAACGTGGATAACAAGTACACCACCTGTAGTCTGGTGGCCAGCTGGCAGCCGGCCATAGGGATAGCGGAGATGTACAGCTTACAGCTCCTCACCGAGCAGGGGGCTCTGATCACAAACCGCTCCGAGACGACCACCTCCACCCAGCACCGATACAACGACCTGACGCCAGGGAAGAAGTACCGGATCAGAGTGTCCACCGTGAGCGGGGGGATCTACAGCGACGCCGCCCAAGCTGAAGGACGGACATTTCCTGCAACGGTCAGCGGTTTAACAATCAAAGAGAACACAACTCACAGCCTGTCCTTCAGCTGGGCCACATCCGAGGGAGAGTTCGAAGCTTACGACATATTTCTGTACAATCCTGACGAAACCCTGCAGGATCGTAAATCCGGCTCGGTCAGCCTCAAAGAGTGGACTTTCCTGGGGCTGCTGCCAGGCAGGATGTATAAAATGGTGATCTTGACCCGCAGTGGAGAGCTGACCAACGACTCCTCCATTCATGCTAGAACAGTTCCAGCCCGAGTGACAGCGCTGCAGGCTGAGAGCAGGAACCGCACAGACAGCCTGTGGTTCAGCTGGGACCAGGCAGCGGGAGACCTCACAGGCTATGAGATCTGGCTGTACAGACCCGACGGCTCCCTGCAGGACAGCGGCCAGGGGAAGGCTGACCTGAGACAGTGGCGGTTTCAGAGCCTCTTCCCAGGGAGGCTGTACAAGGTTGTCATAGCAACCAAGAGCGGTGAACTCTCTAACACGTCCACTGCTGAAGGAAGAACAGCCCCACAGCCTCCCACGTCTGTCTCGTTTGCTGACATCACTAACACGTCCCTGGAAATCACCTGGACGGCACCAAGCGATGCAGACTTCGATGACTTCGACCTGCAGTGGGAGCCCCAGGACCAGCTCTCGGTGGTGGACCCCTACCACAAGGGCCGCTCTGTCAGCCGCATCCTAAGAGGCCTGTACCCCGGGCGGTCGTACAACTTCAGCGTGCGCACGGTCAGCGGCAGCAGTGCCGGACACAGCCCACGCACCTTCAGCAAGCCCATCTATAAGAGCATCCGAACCAAGCCTGCGCGTGTCCAACACATTCACTGCCGGCCCCAGAGCTCCACGGCCATCTCCTGCTCCTGGAGCCCCCCCGAGTCCGACTACGACAGCTACACCATCGAGTGCTACCAGCAGGACCCCCGGCAGCTGGTGTACTCCCGCCGCACGGGCAAAGACACCCAGGTCTACAACATCATCAAGCTGGACCCTCACAAACACTACACCGTCTCCATCAAAGTCATCTCTGACACCATGACCAGCGTGGCCGCAGAGGACAGCGTGATCACCATGATCGACAGCCCCCCTGTCCCGCCCCAGGACACACGGGTGAACGAGAAGGCGGCCCGGATCAAGAAATCCACCATCTTCTTCAAGTTCAACTGCAGCTGGTTCAGTGATGTCAATGGGGCAGTGAAGTATTTCACTGTGATCGTGAATGAGTCTGACACCAGTGACATCCTTCGGCCAGAGCATCAGCACCCCCTGCCCTCATACACGGACTATAACCTCAACAGTTCGATCCGGGCCTACCAGACCAATTACTTTGCCAGCCGGTGTGCCGAGAACCCCGACAACAGCATCCAGAGCTTCGAGATCAACCTGGGGGCGGGGATGGAGACCCTGGGAGGGGAATGCGACCAGTCGCAGCAGCGGTTCTGTGATGGCCCGCTGAAACCCAAAACCCCCTACAGGATCAGCATCCGAGCTTTCACCCAGCTATTTGATGAAGACCACAAGGAGTTCTTCCAGCCCCTCTTCACTGACACCTTCTTCTCGCCGCCCTTAATGACTGAGGCAGAACCGCTGTCCGGAGTCATAGAAGGAATCAGCGCTGGTTTGTTTCTGATCGCCATGCTGATCGGGGTGACTGCTCTGCTTATCTGTCGTCAGAAGGTCCGCAAAGTAAGCGTTGAGGAGCAGCCCACTGTGAGGATGAGTGCCCGGCGAGAGAGACCCACCTCAGGCAATGCACACACTGGACTCAGAAGCCCTATCAAGATTGTACAATTTGAAGCCCACTTTACCAAACTACAGGCTGACTCTAATTACCTTCTTTCGGAGGAATACGAGGACCTGAAAGACATTGGTCGAAACCAATCCCTTGATACAGCACTTTTACCTGAGAACAGAGGCAAAAATCGATACAATAATATACTGCCCTACGATTCAACTCGAGTGAAGCTCTCCTACATCGATGACGACCCATGCTCTGATTACATCAATGCCAGTTACATACCTGGCATCAACTTCCGCCGAGAATACATCGCCACGCAGGGCCCGCTGCCCGGGACCAAAGATGACTTCTGGAAGATGGTCTGGGAGCAGAACGTTCACAACATAGTCATGGTGACGCAGTGCCTGGAGAAAGGACGGGTGAAGTGTGATCACTACTGGCCCTTCGATCAGGACCCGCTGTATTATGGTGACCTGGTGGTGGAGATGCAGTCAGAATCTGTCTTGCCGGAATGGACCATCCGCGAGTTCAAAATCTGTAGCGAGGACCAGGTGAACGATGCTCGGACGGTGCGTCACTTCCACTACACCGTGTGGCCAGACCACGGCGTCCCAGAGACCACGCAGTCCCTGATCCAGTTTGTGAGGACTGTGAGGGACTACATCAACAGAACCCCGGGCTCAGGGCCCACGACAGTGCACTGCAGTGCCGGTGTTGGCAGAACAGGCACGTTCATTGCCTTGGACAGAGTCCTCCAGCAGCTCGACACCAAGGATACGCTGGATATTTATGGGTCTGTCTTTGATCTGCGGCTTCACAGGGCCCACATGGTGCAGACAGAGTGCCAGTATGCCTACTTACACCAGTGTGTCCGAGATGTGCTGAGAGCAAGGAAACTACGGAACGAGCAGGAGAACCCACTGTATCCGATCTACGAGAACGATAGAAGACAGCAGAGAAGTGGAAAGCTCTCGTGGTGCAGCATCCTGAACTTCATCTCCAGCTTCCACATCCCCCTCAGCAACAAGTTGCTGTAGATCAGCTGTAGAGAGGTCTTCGCAATGGGACTCAAGCAGCTCTTCAACATCCTCACTCTCAGAGCAAGAGGAACACAATTTTCCATGATTCTTGGGAGCTTCTCTAATGGTTCAAAGCCTTTAACCAAAACAAACTCCATACAAGCAGTCCTTTGACATCATCCCTGGCCTCCACGATGATGTCACTAGCATTCTTGATGTGAAAGCTCTTCCAAAATGCAAGAACACTTTCCTTATTATCCCCCTCAGTAGCTATAATTAACTGCTTAAATGCGTGCCTTCAATAAGCTTTAAAAGCTGCTACCACTCCCTGGTCCATGGGTTGAAAGAGAGAGGTTGTGTTTGGAGGCAGAATTAGGACTGATCTTTTCAGAAAGCTCAGCAATGGTGGGAGGATAGCTTGGCGCATTATCCAGAATGAGGAGAATCTTGAAAGCCACCCTTTTTCATgcaataattttaaaaacctCTTCGAAATCAACAGAAAGGTCAGAAAAGTTTGCAAAAGTTTGGGTTTTGCAAACTGTGTTTACCTATTCATCAGCTTTACAGCCAAGAAAAAACACTGAGGAGTTGTAGTTTGTATAATTATAGTTTCAATGTactttaataatgtatattaagcTGCTCATCATAAATTGGAaaggttttttcccccctacaATATATCATAGTGCAGTTTATTAATCATTAGATGGAAACCCTCAAGTAGACAGGTCAGTGTTTTCCTGGATTACTGAAAAAATCAAAAAGATTAACCGCCATTCAAGCTACCTCTTGTGTTGTGAGTATATAAGAAATGTTCAGTGTAGAAGGAGACACTTTTTCTAGTGTGTTAATCATGCTGAATAACTTCATTTAGATGTTtcggaaaacaaaaaaacaaaagaaagaaggaaaaactaaaatattattttaaaattgccaGTACGTATCCAACATGTCAAACCCATTGTAATCTAGACTCAATGTCTGGAACggatagaaaatgttttttgctcAGCAGCGCAATGTACCTGTGGGAGGTACTCAGCACTGGAGCTacagatataaaaaatagatttctATCTTGTTAATTCAGCCAAATAATCACAGTCGATTTCTCCATCTCATAAATAATACCAGTCAGGTAATATGCACATGTATTTTTAGATACTAATACtgcactttatatatttaaaaatcactttatcCTTGACAAATAACCATTCCTTATTGCTTACCTCACCCTGCAACAGCATATATCTTAACCTTATGCTTGAGGGAGGTAGTAAGCCCCCGAGCCCCCATCAGATGATAGACAGGAGTTACGGCTTTTTAGATAATCGTGTAGAACTGAGATAGAGGGACAGCATTTTTCGATTCATTTCTATTTATGAATTGCAATTGATAGGGACTGTGTTAATCTGGGCTGcgaattattttaaactttttgttttttctgtttttcattaagaagCATGTCATCCGCAGACTTCCATGTGGTTTAGACTGGATCACGATGCTTTCTTTAATCAGGCTTTTGGTGTATTTAATTCATCTCTGAGACAAGGGCAGTCTCATTGCGTGCATGAATGGCAGAAAATCTCCTTAATGCTGCTAACACACGCACTGCTGGAATAGTTCTCGAAAGATAGGAATCAGTCAGCTGTGACCACCCACACGTACATGGCCACGAGATAATCCCATCAGAGGCAGCAATGCAGGCACATCATCCACTAACATTGCGTTTGTACATTTGAATACTAATTGTACACTTATTTCTGACTATGTCGTTAAAAACACTGCGTATATGTGTGTTATAAAAAggtattgtattaaatatggaaacagaaaaaaaaaaaagtgaagataGATGTTTTTTACGCCATCTCGTTTCATAAAAGACAATTATCACGGGGCACTGGGTCAAAGATAACTCTAAGGCCACTGAAACCGAGTcaacaattaaagtaaattgcGGTGGATCAGTCCAGCTTTTTgcatctctctcacacacacacagtttaagaAGCTTAACAGCATAATTATTACTTGGAAGTAAAACACTTCCACCCCCATTAACAGAGGGCATAGACAGTCCTGCTGAAACCGCAAAGCCAAAGCAACAAGTTAGCACTGCCAAGCAACAACTTGCCACCACCATTTTCCGACAGGAGATTGATGAGTCATTACACACTTTGAATTGGAATTATCAGCAAAATTACCTTATCTTAATTCGGTCTGCTTGAAATTGCAATTTCCTTTGGTAGGATTTTGTAATATCATGCCTCCTTTCTTTGAGTCACCGTTGTATGCTTTGTGATGAACACGTGttttgtgtgttagtgtgagtgcatgtgtgtttgcgGTCTCTTTGTTGTCGCAGTTTAGCATAGTTAATTTCATGATGTATGAAAAAGATTAAGCACTCTGAGGGTCCtctgaaataaatgcatgatgTAGCACACCTTTGATCTGAGTATTTCCAAATCATGGAAAGCAGGTATAAATTAGTTTATAACTTATTGAACGTTCATGACTGCTGTTGTGTGAGTCTTAAGAAACATTCCAGGGCTCTAAGAATTGTGTAGCTATTAAACACAAGTTCGCTTATATGATGCATTTCTTTCTGCAATTTTATGTAACCAAGTATGTAGCAATATGTATCGGTCGATATAAGCTTTGTACACAAATGTATGAACGTATTTTACATATACAGCAAATGTCACTGGATAATACTGACCATATTAAAATCATGCTTGATAATGCTGATAATGATTGCTATTATatgtctatatgtatatgtatatactgtatttggGCTTACAGAACGAAAAAAGCAATCCTGCTGTATGCTTACAGTATCTTTGCCATTTTTCCTTCTTATTCACATTCTCATAATGGTTGTAAAAAGGTATATTTGCTGCTCTTTTGATCACTATTATGTGTTGTATAGGACTCAAAATAATGGCATATAATATTGCCCGATCACTTGCAGTTTCAGAGAAGTGGTTTGGTGTTAAAGGCCCAGAGGCTGCAGTTTGTAAGAAACCGCAAGAGCGTTTCTTTGTTCAATGCAGTGAGAGCTGTGTAATTCACAAATGGGAGGATTCAGATGTTAAACTCTGCATTTATGGCTTCAATGTGAAAAACATGTAATGCTCTTGTCTGGAAACCTCAgattattttatgcaaataatGCGAACCACCAAAGAACTGGCTGCAGTGAAAGTAGCAACCCATAtggaacatatatatatatataatagtagaTGTGTGTCCCCgtgacccacatggataagcggtttcaaaaatggatggatggatggagtaGATGTGTGTGATCATTatgttttagtctgtaatccatattttaatatattttgttgaaaatatataatacatatatagattaactaccagaaaaatatattaaaaatgtatcacatatatttgaaatacacaaa

Function

GO: NA

KEGG:

id description
K05694 PTPRB, PTPB; receptor-type tyrosine-protein phosphatase beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139617 lncRNA downstream 212439 14336701 ~ 14374310 (-) True G111481
TU139614 lncRNA downstream 274725 14311727 ~ 14312024 (-) True G111478
TU139585 lncRNA downstream 291200 14290467 ~ 14295549 (-) True G111452
TU139599 lncRNA downstream 340575 14244602 ~ 14246174 (-) True G111466
TU139580 lncRNA downstream 363421 14216934 ~ 14223328 (-) True G111451
TU139784 lncRNA upstream 79246 14712017 ~ 14713959 (-) True G111621
TU139789 lncRNA upstream 96200 14728971 ~ 14730469 (-) True G111622
TU139788 lncRNA upstream 96929 14729700 ~ 14730469 (-) False G111622
TU139793 lncRNA upstream 100399 14733170 ~ 14734171 (-) True G111626
TU139797 lncRNA upstream 161947 14794718 ~ 14794949 (-) True G111630
AMCG00006690 mRNA downstream 198363 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006687 mRNA downstream 220262 14365642 ~ 14366487 (-) True AMCG00006687
AMCG00006681 mRNA downstream 316058 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006678 mRNA downstream 432417 14139065 ~ 14154332 (-) True AMCG00006678
AMCG00006676 mRNA downstream 453662 14130780 ~ 14133087 (-) True AMCG00006676
AMCG00006696 mRNA upstream 11836 14644607 ~ 14665799 (-) True AMCG00006696
AMCG00006698 mRNA upstream 176090 14808861 ~ 14818516 (-) True AMCG00006698
AMCG00006702 mRNA upstream 272777 14905548 ~ 14927342 (-) True AMCG00006702
AMCG00006706 mRNA upstream 931828 15564599 ~ 15574755 (-) True AMCG00006706
AMCG00006707 mRNA upstream 994445 15627216 ~ 15631171 (-) True AMCG00006707
TU139625 other downstream 222327 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 1083521 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1708093 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1708093 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 2446356 12137182 ~ 12140393 (-) True AMCG00006625
TU139783 other upstream 92880 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 92880 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1120050 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 3000120 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 3706499 18339270 ~ 18341210 (-) False AMCG00006754

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000191_00467451_00474334.mRNA True 1884 mRNA 0.50 14 CI01000191 467451 ~ 474334 (+)