RNA id: AMCG00006696


Basic Information

Item Value
RNA id AMCG00006696
length 906
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00006696
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14644607 ~ 14665799 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTCGGGGCGAagcctgtgtttgtgttgcctGGCACATTTATCAGACTCTGCAGGTGGACATTCGCAAGCTGAACATGACCCTGCTTCACGCATTCAGAGAGGGGGTGGCTTCCGCCCTGGACATTTCACCTCGACAAGTGCATATAAACCGCCTCAATGAGAAAAAGAACTGCATAGAGCTCTACGTGTCTTCAGAGAAAGCAGACATGGTGGATCCTGTAACCTCGGAGGAAGTGATCCAATCCCTTAATATCAACATCCTTCACAAGAGCCTGTCCCAGTTTGGCATCACTGAAGTCACCCCAGAGAAAAATGTGCTGCAAGGACAACATGAGAGGGACAACGTGTGGACCAAAGAGGGATTTTATGCTGTGGTTATATTTCTCACCATCTTTGTAATCATTGTCACTTGTTTAATGGTCCTGTACCGGCTCAAGGAGAAGATTGAGTACCCCGATCAGCAGTACAAGCCGCAGAGCCGGGAGATCCACCTCGCCCCCCTCCCCGTCCAGACCAAGCAGCCTGAGCTGAAGATCGCCAACAGCATGGTGCAGCCCGAGCGGGCACCCAAACCTGCCAGCGCCAGTGCCGACCCCCAGTGCCAGTCTGTGCCGGAGATCAAACCCTCTCTGTCCGCCAGTCCTTCTCCCTTCAAAATGAAACCCGTGGGCCTCCAAGAGAGACGAGGGTCCAACGTGTCTCTGACTCTGGACATGAGTGCCTTGGGGAATGTGGAGCCCCTCAGCAGCGTGCAGACCCCCCGAGAGAGAGTCTCCATGGAGTACCTGCAGTCGGCCAGCCGCACACTGAGCCGGCAGCAGCTGCGCCACGCCGTGGTCAACACACAGACCCTGCATGCCGAGTTTGCGGTAATGTCCTCACCCACCTCCTCTAACATCTAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139617 lncRNA downstream 270297 14336701 ~ 14374310 (-) True G111481
TU139614 lncRNA downstream 332583 14311727 ~ 14312024 (-) True G111478
TU139585 lncRNA downstream 349058 14290467 ~ 14295549 (-) True G111452
TU139599 lncRNA downstream 398433 14244602 ~ 14246174 (-) True G111466
TU139580 lncRNA downstream 421279 14216934 ~ 14223328 (-) True G111451
TU139784 lncRNA upstream 46218 14712017 ~ 14713959 (-) True G111621
TU139789 lncRNA upstream 63172 14728971 ~ 14730469 (-) True G111622
TU139788 lncRNA upstream 63901 14729700 ~ 14730469 (-) False G111622
TU139793 lncRNA upstream 67371 14733170 ~ 14734171 (-) True G111626
TU139797 lncRNA upstream 128919 14794718 ~ 14794949 (-) True G111630
AMCG00006695 mRNA downstream 11836 14586749 ~ 14632771 (-) True AMCG00006695
AMCG00006690 mRNA downstream 256221 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006687 mRNA downstream 278120 14365642 ~ 14366487 (-) True AMCG00006687
AMCG00006681 mRNA downstream 373916 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006678 mRNA downstream 490275 14139065 ~ 14154332 (-) True AMCG00006678
AMCG00006698 mRNA upstream 143062 14808861 ~ 14818516 (-) True AMCG00006698
AMCG00006702 mRNA upstream 239749 14905548 ~ 14927342 (-) True AMCG00006702
AMCG00006706 mRNA upstream 898800 15564599 ~ 15574755 (-) True AMCG00006706
AMCG00006707 mRNA upstream 961417 15627216 ~ 15631171 (-) True AMCG00006707
AMCG00006711 mRNA upstream 1020893 15686692 ~ 15691047 (-) True AMCG00006711
TU139625 other downstream 280185 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 1141379 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1765951 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other downstream 1765951 12876292 ~ 12878656 (-) True AMCG00006641
TU139089 other downstream 2504214 12137182 ~ 12140393 (-) True AMCG00006625
TU139783 other upstream 59852 14725651 ~ 14753970 (-) False G111621
TU139786 other upstream 59852 14725651 ~ 14753970 (-) False G111621
TU139946 other upstream 1087022 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 2967092 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 3673471 18339270 ~ 18341210 (-) False AMCG00006754

Expression Profile