RNA id: AMCG00006697


Basic Information

Item Value
RNA id AMCG00006697
length 3459
RNA type mRNA
GC content 0.50
exon number 14
gene id AMCG00006697
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14771451 ~ 14780474 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaaacaggagacacttcttcacacagagagttattataatctggaacaaattcccagcgatgtggttgaagccacaatgtgggaacatttaaaaatagactgggtgtgatccttggatcatttagttattaatggaaaccaaacgagCTGATGGGTCGAGtggcctctcgtttgtaaactcttttatgtttttctgataTGTGTTCGTTATGACGTCAGGTGTTGTGAGTCGCGTACGTAACAGTCGCTGGAATTCGATTGTGTTGCTCTGTGGATTTCGCCTAATTAGCGCTGATAGTGAGTTTGTAGACGGAGCCGTACAGTGAATTGATTTTACCAACGAGTAATTTCAGTTTTACCGACAGTCTTTTGGttgtattgaattcaaaatatggCAGCTATTGCAGACTTCAAGTTTTGTATTGAAGACTCTGCAACTTTCAGGTAGGTCGCTTCAAATCTAtcgttttcttttcattgcagCAGGGTATGTATAGACTAcgtgtttttaaatgacattacaGTTAAAGTCTGCACacaatgtgaataataatgtttttcaccAGTACAAGATCGTGTGAATTGTTCCTAAGTGTGGGTGTGTAGCTACACATTGAACCATTATTCTCGTATATTGATTACTGTATGAGAGCATATGAAATATGCTGAAATGTTACTGTTTTACTCCATGAGACAAAGTAATGAATATAATGACTGTGGTGTATAGGcatataacttttttgttttctttttgtaatattttccatttttgtctaagctattaatattttctgatatctgttgagtaaaaaataaatctgggtCATTTAAACGTCGAATGTTAACAACAGATTTTGAGCCAACCCCTAAAGTgtattgctttcattatttCGTAATCCTCGGCACAACCAAGACTTCTGTGCAAATGTTGTTGCATTGATTTTATGTTGTAGGTGGAAATATACCCCTGACGAGAAGGAGAATGAGCGGCAGTTCCTGCTGGACTTACAGTTCATCTGTGACAAGCTGCAGAAACTCCGCATTAGCGATGTGGTCCTGGCTAAGgCCATAAATACCCCTGTGCATCGCCTGGACCCCAGTCAGCTGACAGGGATGAACTCTCTCCCTGACCTTACCCCCTCTCTTGCCAACCTTGGCAAACAGCCCATGGGGGGACATGGCCCAGGCTCTTTGCCCCCCCAGCCCTCAGCAAAGGGTGCCCGGTCCTCCTGGCAGGGCGAGAGGAAGGAGCCGCGAATCATCAACGTGTCATTCACATATGAGATTCAGCTCAACAAGGCCGAGAATGCCTGGAAGCCTACAATTAAGCAGGCTCCAACTGTGGGTGATGACCCCGAGGTCATTAAGACCCAGGAGCTGTTCCGCAGGGTGAACGGTATCCTGAACAAGCTGACCCCACAGATGTTCCAGCCTTTGATGCGTCAAGTGAACGAACTGACCATCGACACGGAGCAGCGACTCCAGGGTGTCATGGAGCTCATCTTCGAGAAGGCCATCTCCGAACCCAACTTCTCCGCCACATACGCCAATATGTGCCAGTGCCTTCTGAGGTTCAAAGTCCCAGCCGCTGACAAGCCGGGAGAGACGGTGCCTTTCCGCACTCTGCTTTTGAACCACTGCCAGCAGGAGTTTGAGACGGAGGAGGATGGAGACGAGGGCGAGGAGCGGCAGCGTCTATGTGACGAGCTGCAGGAGGCCAAGTGCAAGGCCCAGCGGCGCTCGCTAGGCAACATCAGGTTCATTGGGGAGCTGTTCAAGGTGAAGATGCTGGTGAAGAAAACCATGCACAATTGCATCGTCAAGCTGTTGAAGAACCACGAAGAGTCCCTGGAGTGCCTGTGCCGACTGCTCTCCACTATCGGCAAAGACCTGGACTTGGAGACCGCCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCAGATCATCAAAGAGAGGAAGACCTCTCCTCGAATCCGCTTCATGCTGCAGGACGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCAGGAGGGGTGACCAGGGTCCTAAGACAATCGACCAGGTCCACAAGGAAGCAGAGCTGGAGGCGCACCGTGAGCAGATCAAGGTGCAACAGCAGCTCATGAGCAAGAAGGACAACCGACGTGGGGGCCCTGGGGGGCCGCGCCCTGCAGCTCCTGAGTCTGGATGGCGCGCTACCGGCACCCTGAAGCGCTGCTCCACCCTGCAGCAATCGTCCTCCGCCGCTCCTTCCTCCGTTTTCAGGAGTAGCTCTCGCCGGGATGGCGGTGAGTGTAATAACCTCTTCAAGCAGCCGGAGCGTCACGAGCGCGGCCAGCGTGAACACTCAGAGAGGAGAGGCGCCGGGGATAAGAGCAGCCTGGACAGGATTGACTTGAAGAAGCCAAAGTCCATCATTGGGGAGTGTCTCCACCTCAATGACATGAAGCCCTCAGCAGTGGCTCCCCAGCGCTCccagcagggagagaggagggagcaGCGCAAGGTCATCACCCTGTCATTCTCACATGAGGTTCAGCTCAACAAGGCCGAGAAGGCCTGGAAGCCTACAATTAAGCAGGCTCCAACTGTGGGTGATGACCCCGAGGTCATTAAGACCCAGTTCAAAGTCCCGACCAATGACCAGCCGGGAGAGATGGTGACTTTCCGCACTCTGCTTTTGAACCGTTGCCTGAAGGAGTTTGAGATGGAGGAGGATGGAGACGAGGTCTtcaagaagaaacagaagatgCTGGATGCATCCTTGGGCGAGGAGCGGCAGCGTCTACGTGACGAGCTGCAGGATGCCAAGCACAAGGCTCAGTGGCGCTCGCTAGGCTACATAAAGTTCTTTGGGGAGCTGTTCAAGGTGAAGATGCTGACAGAGGCCATGATGCACGCCTGCATCTTCAAGCTGTTGAAGAACCACGAAGAGTCCCTGGAGTGCCTGTGCCGACTCCTCTCCACTATCGGCAAAGACCTGGACCTCCAGACAGCCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCAGATCATCAAAGAGAGGAAGACCTCCCCTCGAATCCGCTTCATGCTGCAGGACATCTTAGACCTGAGAAGAGATAACTGGGTGCCCAGGAGGGGTGACCAGGGTCCTAAGACAATTGACCAGGTCCACAAGGAAGCAGAGCTGGAGGCGCACCGTGAGCAGATCAAGGTGCAGCAGCAGCTCATGAGCAAGAAGGACAACCGGCGTGATGCGAACTTCAGTGAAAGTGTCCTGTCACGCGTTGGTCGggccagagcagagcaggcCAGGAAGAGAGGGACTTTTGCGAAAGCACTAGAAATAGAAGCACCAGTCCTTCTCTGGCGAAGATGAAAGCATCAAGATATGATCATTAAAtttctttcccttctctgtttaatctacaaaataaaatgataatgttCTTCTGTTCAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139714 lncRNA upstream 33812 14736202 ~ 14737639 (+) True G111562
TU139679 lncRNA upstream 138471 14628726 ~ 14632980 (+) True G111531
TU139569 lncRNA upstream 459427 14311752 ~ 14312024 (+) True G111443
TU139542 lncRNA upstream 633707 14136319 ~ 14137744 (+) True G111420
TU139484 lncRNA upstream 835197 13933666 ~ 13936254 (+) False AMCG00006672
TU139796 lncRNA downstream 14244 14794718 ~ 14794949 (+) True G111629
TU139802 lncRNA downstream 28774 14809248 ~ 14811063 (+) True G111635
TU139812 lncRNA downstream 113325 14893799 ~ 14895938 (+) True G111645
TU139833 lncRNA downstream 159734 14940208 ~ 14942924 (+) True G111666
TU139872 lncRNA downstream 414820 15195294 ~ 15200003 (+) True G111699
AMCG00006694 mRNA upstream 195179 14574681 ~ 14576272 (+) True AMCG00006694
AMCG00006693 mRNA upstream 198039 14549343 ~ 14573412 (+) True AMCG00006693
AMCG00006692 mRNA upstream 230105 14514304 ~ 14541346 (+) True AMCG00006692
AMCG00006688 mRNA upstream 305565 14450266 ~ 14465886 (+) True AMCG00006688
AMCG00006689 mRNA upstream 329815 14425769 ~ 14441636 (+) True AMCG00006689
AMCG00006701 mRNA downstream 83340 14863814 ~ 14891825 (+) True AMCG00006701
AMCG00006700 mRNA downstream 150549 14931023 ~ 14937252 (+) True AMCG00006700
AMCG00006699 mRNA downstream 167697 14948171 ~ 14963480 (+) True AMCG00006699
AMCG00006704 mRNA downstream 198219 14978693 ~ 15002282 (+) True AMCG00006704
AMCG00006703 mRNA downstream 225838 15006312 ~ 15037025 (+) True AMCG00006703
TU139270 other upstream 1728003 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 5204100 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 6047385 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 6594665 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 7116257 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 6157023 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 6267862 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 6362391 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 9251639 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 9524305 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile