RNA id: AMCG00006698


Basic Information

Item Value
RNA id AMCG00006698
length 2379
RNA type mRNA
GC content 0.36
exon number 8
gene id AMCG00006698
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14808861 ~ 14818516 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTGGGTCATTAATTGGGTTGGgctaataatacattgtatccCTGAATAACAAATaatctaagaaaataaaaaaacaaataaacagtagTGCAAAGAAGTAAACTGGGAAATCTGCGGTGAAATTCCCCAAAATaacaattgaattaaataacacTCCTGAAAATAGAATAGAAACCATTATTGGCAGGAGGCGAAATTGGGTTATAACGTCAATACCGCCATTGCAAGCCTGCGGGACGAGCGCTTCTGCAGCTGCCGTTTCAGGAACTCATTTCAATATTTACCTCCCCACCCACTTGACGTGTACCGGAGCATTGCCGCAACTAGCATCGCCTGGTGTCAAACTTAAAAACCTCTGAAGATGGCAGTCAACAAATGCGTGAAGTATTTACTATTCCTCTTCAACTTGCTCTTCTGGATTAGTGGATGCATCATACTTGCAGTTGCAATTTGGCTACGTGTGAGCAACAATGCTAACAAGgtcaCTCAGGTGTCTGTTCCTGGCATAGACCTGCTAATTGCCATTGGCGTGATCATTATGATCCTCGGGTTCCTTGGCTGCTGTGGTGCCATTCGAGAGAGCAAAGTCATGCTTATGCTGtttttcaTTGGTCTTCTCCTCATCTTCATCCTCCTGCTGGCAGCTGGCATTCTTGGAGCTGTTGGTGAAAACAAAATTAATGACTGGATCCAAGAAAGCCTGAAGAAACTTCTTCCATTGTCATCACAACCTCCAGATGTACAGACTGATCTCCAAGCTCTAGAAGTACAGGGTAAATGCTGTGGATTAGTCAATGGATACAGTGACTGGGGTTCCAACATCCCAACATCCTGTAACTGCACCGATACCTCTGCACCGTGCCAGACATTTGGGACTCGCAATTTGTACAAAACGCCTTGTATGACATTTGTGATAGCATTTATGAAGCAGAACTTGACTGTTGTTCTGGGAATTGCCTTTGCAATTGCTATCCTCATGatCTTCGGCATGAGCTTGGCAATGACGCTTTACTGCCAGATTCGTAGGAAAGAGGCTGGTCAAGCATGAAGAGTCAATGCTTAAATGTCAACTGTCAATGTGGGCTGTAAGAATACACTTTAAGTGAAGAGAGATTTGCAATGGAAATGGGTTTTAACTAATTTCACTTTCGTTTAGCCGTTTATACTTTTTtgattgttaattaataataaagttccAAATGTATGCATAATGTAAAGATTGGctaaaaatgctttgtttttccttcataggtttgcatgtatgtttttacttaaaataaagatCAAATTCTAAATCATACCTAACCATccttcttttgaaaaaaaaataataataataataaagaaaaggggCAGTGCTCTCCATTTGAATGAATGTAATGCTTTTACAACAATACTGACTTTTCTTGGATTTACGAGTATGTGCATGAATTCTGTAAGTTGTCAGACTGGCTTAAAACTCCTTCTTTGtgtgcacaaaacaaatgtagttttGAACAGTTGAACATTTTTTCTAGTACACTAGTGTGAACATGCCGAATTATATCTTAGATTTGGAAGATTATTGTTGTGCTACTTCAGATTACCATTTTTCAAggcatatatattgttttgctctgcttttgttttctaaaaacaaaactacaaaaaacacCTATTTAATTACTGATtggatatttaaatgtaatccaggaatatttatattatatccACAAAGATATAGATGCATAATCTAGCTTCctgtttgtgatttatttttgtatcaactttaataaaactttttttattattgcaaatgTTCTGATTGTTAAACTGCtggaatgtttttaatattggcattatatataatgcagCTATAACATTGTTAATCTGTTTTGATTGTGTAACTAAATTTACCTCAATGTTTAAAGTGTTGCTTATTTATTAGTCTGTGACTGACTGTATTGTCTAGCATGACTTCCTGGAGATTAAACTTTATACTAAACCATCTCCCAATCATttagttttcatgttttgttataAAACTACCAAAAGAAACCTACATTTGTTCAGCTTGTTCTGATAGAATGATTAGTAATtagcttattttaaataattgacaTTTGTGTCCATTTCATAAGCTTTTACAGGTTTGATCTCATTGTTTTCACTTCAGCAATATGAACAATATGTCTGAATTGGATTTACAGACTGTGGgtatttttagattttcttgCATGAATTGCATTTATGAGCCCCCATTTTAGAGAGAATACTCTGTTACACCTGTAATCATAGAAAAGTGCTCTCTGTCATCCAATAATTAAAGGATTGGGTTTAgccaggtttgttttttctcactgCCTTGAATGAGCCCTCTTATTGACAATGAAACCGC

Function

GO: NA

KEGG:

id description
K17349 TSPAN8; tetraspanin-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139797 lncRNA downstream 13912 14794718 ~ 14794949 (-) True G111630
TU139793 lncRNA downstream 74690 14733170 ~ 14734171 (-) True G111626
TU139789 lncRNA downstream 78392 14728971 ~ 14730469 (-) True G111622
TU139788 lncRNA downstream 78392 14729700 ~ 14730469 (-) False G111622
TU139784 lncRNA downstream 94902 14712017 ~ 14713959 (-) True G111621
TU139901 lncRNA upstream 718960 15537476 ~ 15537836 (-) True G111728
TU139903 lncRNA upstream 739427 15557943 ~ 15558201 (-) True G111730
TU139912 lncRNA upstream 839482 15657998 ~ 15659412 (-) True G111736
TU139937 lncRNA upstream 910097 15728613 ~ 15729533 (-) True G111759
TU139944 lncRNA upstream 923930 15742446 ~ 15742715 (-) True G111765
AMCG00006696 mRNA downstream 143062 14644607 ~ 14665799 (-) True AMCG00006696
AMCG00006695 mRNA downstream 176090 14586749 ~ 14632771 (-) True AMCG00006695
AMCG00006690 mRNA downstream 420475 14376328 ~ 14388386 (-) True AMCG00006690
AMCG00006687 mRNA downstream 442374 14365642 ~ 14366487 (-) True AMCG00006687
AMCG00006681 mRNA downstream 538170 14252185 ~ 14270691 (-) True AMCG00006681
AMCG00006702 mRNA upstream 87032 14905548 ~ 14927342 (-) True AMCG00006702
AMCG00006706 mRNA upstream 746083 15564599 ~ 15574755 (-) True AMCG00006706
AMCG00006707 mRNA upstream 808700 15627216 ~ 15631171 (-) True AMCG00006707
AMCG00006711 mRNA upstream 868176 15686692 ~ 15691047 (-) True AMCG00006711
AMCG00006712 mRNA upstream 883858 15702374 ~ 15704607 (-) True AMCG00006712
TU139783 other downstream 54891 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 54891 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 444439 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 1305633 13455432 ~ 13503228 (-) True AMCG00006663
TU139243 other downstream 1930205 12876292 ~ 12878656 (-) False AMCG00006641
TU139946 other upstream 934305 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 2814375 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 3520754 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 4814721 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 5417340 20235856 ~ 20236206 (-) True G112420

Expression Profile