RNA id: AMCG00006701


Basic Information

Item Value
RNA id AMCG00006701
length 1992
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00006701
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 14863814 ~ 14891825 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCTCAGCATGAACAACATCACCCAACTGCCCGCCAGTGCCCTTTCCAACCTCCACTTCCTAGAAGAGCTAATGCTCCAGAACAACCAGCTCAGACAGGTCCCCAGCGAGGCCCTTCAAAACCTGCGCAACCTTCAGTCTCTACATCTCCATAACAATAGAATTCGCTCCCTGGGAAAGAAATGCTTTGATGGCCTCCACAGCCTCGAGACTTTGGATTTAAATTACAACAATTTGGATGAGTTCCCCATTGCAATCAAAGCCTTGACAAACCTTAAAGAACTGGGTTTCCACAGCAACAACATCAAGTCAATTCCTGAGCACGCTTTCCTTGGAAATCCCTCTCTCATCACAATGTCCCTAAACGGAGCCACGGAGATCACTGAATTCCCAGACCTCACTGGCACCAAAAGCCTAGAAAGCCTGACCATCACTGGAGCCCGGATCACGTCTCTTcccagtgcagtgtgtgaaCAGTTACCAAACCTGCAAGTCTTAGATCTGTCCTACAATCTGATACAGCAATTGCCGAGCTTTAACGGCTGTGAGAAGATTCAGAAAATCGACCTGCATCACAATGAAATCCAGGAGGTCCATGCCGATACGTTTCAGGAGCTGACATCACTCCGATCCCTGGATCTTACCTCCAACCTCCTATCGTCTCTCCCTGTGACTGGCCTGCATGGTCTGACCCATCTGAAATTGGCCGGCAACGAAGGTCTTCAAGAGCTGTTGTCCGCAGAAAACTTTCCAAAACTGAGGGTTATGGAAATGCCGTATGCTTTCCAATGCTGTGCCTTTGTGTCCTGTGAAAACCAAAAGGTCCCCAACCCCTGGGACAAAGAGGAGAACAGCAGTAAAGATGACTTCATCAAGAAAGAGTCCAGCATACTGGCCAACCAAGGTCCGTTTCGGCCCTGTGATCATCTCTTCGGCAGCTGGCTCATCCGCAGTGGGGTGTGGATAATAGTGGTGCTGTCTCTGGTCTGTAATGGAGTGGTGGCGACCACTATTTTCTTTTCACCGAGCTTCATAACTGCATCCAAGCATCTGATTGGCCTTCTTGCCGTGGTCAACAGCCTCATGGGGCTCTCCAGTGGTGTCCTAGCAGTGGTCGATGCCTTGACGTTTGGGAGCTTTGCCAAATACGGGGCGTGGTGGGAGAGTGGCATTGGCTGCAAGATCACCGGGTTCATGTCGGTCTTTGCCTCGGAGACGTGTATCTTCTTGTTGACGACTGCCGCACTGGAGCGGGGTCTTTCCATCAAGTGCTCCAAAAGAGTGGAGACAAAGTCTGCCTCCAGCAACGTCAGGATCGTGTCGGCTTTTTGCTTCATCCTGGCGTTGGCCATCACCGTCCTGCCCTTGCTGCACGTGGGCGAGTATGGcatctcctctctgtgtctgccACTGCCCTTCGGAGAGCCATCCAGCCTGGGCTTCATGGTGGCCTTGGTGCTGCTCAACTCGCTGTGCTACTTTGTGATGACGGTCACCTACACCAAACTCTACTGCAACCTGGAGAAGGGAGAGCTGGACAACTTCTGGGATTGCTCCATGATCAAGCATGTGGCCTGGCTGCTTTTTACCAACTGCATCCTCTACTTCCCTGTAGCCTTCCTGTCCTTCTCCTCCCTGCTGAACCTGTCCTTCATCAGCCCCGAGGTGATCAAATCCATCCTCCTCGTCATTGTCCCCCTGCCAGCCTGTTTGAACCCCCTGCTCTACATGCTCTTCAACCCTCACTTCAAGGAAGACCTCGGCCTCCTTCTCAAGCAGACACGCTTGTTAAAGAGGTCCAAGCAGGCCAGCTTGGTCTCCCTGAACTCAGAAGATGCTGAGAAGCAGTCTTGTGACTCTACCCAAGCTCTGGTCACATTTAGCAGCTCAGAGAAGCCAGGCAACCTGTCAGACAACAAGTCCATCCTTCCATCTCCACAGAACATTGAAGGTTACCACTCCCAGTCAGTGGCATGTGTTCCGTATCATTAG

Function

GO: NA

KEGG:

id description
K04308 LGR5, GPR49; leucine-rich repeat-containing G protein-coupled receptor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139802 lncRNA upstream 52751 14809248 ~ 14811063 (+) True G111635
TU139796 lncRNA upstream 68865 14794718 ~ 14794949 (+) True G111629
TU139714 lncRNA upstream 126175 14736202 ~ 14737639 (+) True G111562
TU139679 lncRNA upstream 230834 14628726 ~ 14632980 (+) True G111531
TU139569 lncRNA upstream 551790 14311752 ~ 14312024 (+) True G111443
TU139812 lncRNA downstream 1974 14893799 ~ 14895938 (+) True G111645
TU139833 lncRNA downstream 48383 14940208 ~ 14942924 (+) True G111666
TU139872 lncRNA downstream 303469 15195294 ~ 15200003 (+) True G111699
TU139899 lncRNA downstream 584329 15476154 ~ 15476714 (+) True G111726
TU139900 lncRNA downstream 645604 15537429 ~ 15537841 (+) True G111727
AMCG00006697 mRNA upstream 83340 14771451 ~ 14780474 (+) True AMCG00006697
AMCG00006694 mRNA upstream 287542 14574681 ~ 14576272 (+) True AMCG00006694
AMCG00006693 mRNA upstream 290402 14549343 ~ 14573412 (+) True AMCG00006693
AMCG00006692 mRNA upstream 322468 14514304 ~ 14541346 (+) True AMCG00006692
AMCG00006688 mRNA upstream 397928 14450266 ~ 14465886 (+) True AMCG00006688
AMCG00006700 mRNA downstream 39198 14931023 ~ 14937252 (+) True AMCG00006700
AMCG00006699 mRNA downstream 56346 14948171 ~ 14963480 (+) True AMCG00006699
AMCG00006704 mRNA downstream 86868 14978693 ~ 15002282 (+) True AMCG00006704
AMCG00006703 mRNA downstream 114487 15006312 ~ 15037025 (+) True AMCG00006703
AMCG00006705 mRNA downstream 175063 15066888 ~ 15067622 (+) True AMCG00006705
TU139270 other upstream 1820366 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 5296463 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 6139748 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 6687028 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 7208620 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 6045672 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 6156511 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 6251040 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 9140288 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 9412954 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile