RNA id: AMCG00006709


Basic Information

Item Value
RNA id AMCG00006709
length 3476
RNA type mRNA
GC content 0.38
exon number 10
gene id AMCG00006709
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15674427 ~ 15683069 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACAATGTTGTGTCTGAGCTGGACGGTGTATGATCTCTGCATTTCGCTCACATGTTTCTGTTACACAGGCAGAGAACATAccatcccacaatgcaccgctTCGGGTAAAACGGAAGTTCCCGGGGATCGTGACGCGGGGGTGAAAGGTTACGTAGTGAAAATGGCGACTTCCGTGGAAGCAGCAGGCGTGAGAGCAAAGCCAAgggagaagaaacagaaaaagcaaagccaagTTGATGAGTCCGAGCTTCTGACAGTTCCTGAAGGATGGAAAGAGTCGCCATTCACGAAAGAGGACAATCCCCGGGGTTTGCTGGAGGAGAGCAGTTTTGCTACTCTCTTCCCCAAGTACAGAGAAGCCTACCTAAAAGAGTGCTGGCCACTCGTTCAGAAAGCCCTGAATGATTCTcACATCAAAGCAACCCTAGACTTGATTGAGGGTAGTGTAACTGTCAgcaccacaaaaaaaacatttgatccaTATGCTATTATACGTGCCAGAGATTTGATAAAGCTGTTGGCAAGAAGTGTTCCATTTGAACAGGCTGTGCGAATTCTTCAGGATGATGTGGCCTGTGACATCATTAAAATTGGGACTTTAGTACGAAATAGAGAACGATTTGTGAAAAGGAGACAGAGACTAATCGGTCCAAAAGGATCAACTCTAAAGGCTCTTGAGCTGTTGACAAACTCTTACATTATGGTTCAGGGGAACACAGTGTCTGCTTTGGGACCGTACAGTGGTTTAAAGGAAGTCAGAAAAGTTGTCTTGGATACAATGAAGAACATTCATCCCATATACAACATAAAGACTTTGATGATCAAGCATGAGTTGGCAAAAGACCCCGATTTGCGAATGCAGAACTGGGAGAGGTTCCTGCCTCACTTCAAACACAAGAACCTAAGCAAACGCAAGGAGCCCAAGAAGAAGGCCATTGATAAGGAATTGGCTACCGGAGAGTTCTTCCTCCGAAAGACTCAAAAGAAACGTAAGAAGATGGAGGAAATAAAGGTGAAGCAAGCTGAAGTATTAAGCAAGAGGCAGGAAGAAAGGAACAAGGCATTTATTCCTCCAAAAGAGAAACCAGTggttaaaacaaagaaagtTCCTGCTGAGGCTAAAATAGATATCGCAGCCATCaaagagaaagtaaaaaaaGCCAAGAATAAGAAGCTTGGTGCCCCTCCAGTTAACCCTGCCCTTCAGACGTCTGCGaacgaaaagaaaaagaagcgGAAAGGCTGAATGTGTTTTGACTTATATGAGAACATTATTGGACTTTTCCATTTCTCCTGGCAAGGCTGTGGTTCTGAGTTCACGACCGCTTTCTAAATTCTGCATCTCAAAGACCAAGGTCTTGATTACTAGAACCTGAAACCTGTTTTGGTGGTGTCCAAGTGGAACAGTATCTTTGTTCCATGTTGAGAACTATTTCTGTTCAtccatttgtgattttttttatgtccatgtaaaatatacacaataaatacaatcttaatgttatttcattttattaaggtttgttttgtagttgCTTCACATCATACAGACAACTACAAAGCATTCACCTGTTTTACTAATTCTAGTGTGGAAGCTTTGGTTTTTAATGCTTTGTGGTTTTCATTGAAAACGTATTTCAAAATACCATTCAGTGttttgggattttattttatttttaaaccaaaatggATACATGtcagacatttaattttaacaatccAGTTTGTCTACTAATTGATATTTCAACATAAAAGTCACTAGAGAACTGGGATGCTGTAACAAATCAAAGGGAATTACTTGCATTTATCTGAAACAGAAAGATACATTATTCCACATGTCCTACAAACCAAGATAAGACAGCAGTGTTGACAATATAGAAACATGAAAGAGGCAGGTGGGGGCCCCACATCTCTTAAAGTAGAAAATAGTAAGTGCATAGTTGTAATAAGGATACCCTGTTCTCCCTGGTGAATCCATGATGAATCGTGAGTGATTTCTATTACTCAGATGAGAATATTAAAGGAAATTCCACCCAGCACCACAGAACCAATGCCAGTGTTAATGGTGATAACTAACCTTTTTGCACTGGTAACAGTTAAATGACCTTGCCATCTCCATCTTTCTTACAAAAGTTAACTTTGTAAACCATAATGTCTGTTCCTTATGATAAATCTCAAATTTGTAATTTTCCTTGTAATGGTGCCAAATACCTAAATCAGTTGTTCTGtaaatttgttttccattgtatgttttattgtaattgtgatttattagGAGTAGCATGTTCCTCTGGTCTGCCTTCCCAAAAGGCACGGTCTACTGGACCTAAAATGTTAGTTCTTATACAGTTGACTACAGACTCCCATACATAGTGATTGGtcacaaagaacaaaaatattctTTGGCATaaactttttttcctcctgctctctttttccatgtattttaaGCCACAtttcatagttttgttttaaaaggtacAGTTTAGGCCCAGGAACCTATGCCAAGAAATGGTTTCTGAAGTTCGATGCTTCTAAGGAGACTTGCCTCTGcccagcttttgtttttttcgacCTGCCTACAATACGATTGTATATGATTGTGATATTTTTCCAGTGTACCCACCCATGCTGCTTTGTGGAACTAGATTTGAAGTTACCTTGACTGCAATAGTAAAGATGTTTCCtctgataaaatgtaaatttctaagaaatgttttactttcatgtgcatttttttccttGTATGTATAAGTACCAATATTTTTGTTGGAGAAGCATATAAAGGCATTAAATTGATACGTAATCTCTAAATAATACAAACGACATGCACTAAAAGCAAAATCTTCTGAAGCTAAAGTCTTAAAGCTaatatctgtatttgtatttattttttcctgttcatACAACAAGCTATTGTGTCACAGTATTAAGTGTGTAGCCCACATGCTCTAAATGGTGCAAGTATTTAACAATTTGTGTCCAGTTCATGTAGTGTGTGTAAGGTATGCTTGGAGAAACCATATACAAAAGCCAGTTTATTACTATTCAATAATTTTACAACAGCAGGGACCACAGCATTATGACTTATAGTTAACTTGTTTTCATAACGTTACATGTGTGTTCTACAACTAAGTGATGTGTAATTTTAACAAAGGAGTAAGGAAAAATaagattattaattttaataagtaCAAAGTGTATTTCTTATCATCATACACAACAAACCAATTAGGCTaactcaaatgtatttaaagtaaagAGTGGCATTAATCTCCAGTGTAACAAAATCTGTAACATGTATAGTAATTTACAGGCAGTAGAGTTGCCAGggagttattataattattacactAACATGGGAGTTACTGTCAAGTGTgatacattacacatttttctgAACAATCTACAGTATTTATCCCAGTACTGTACATTACAGTCAATTCTGGTAAGAGTTACTGAATTATTAGTTCTG

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K06961 KRR1; ribosomal RNA assembly protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139900 lncRNA upstream 136586 15537429 ~ 15537841 (+) True G111727
TU139899 lncRNA upstream 197713 15476154 ~ 15476714 (+) True G111726
TU139872 lncRNA upstream 474424 15195294 ~ 15200003 (+) True G111699
TU139833 lncRNA upstream 731503 14940208 ~ 14942924 (+) True G111666
TU139812 lncRNA upstream 778489 14893799 ~ 14895938 (+) True G111645
TU139943 lncRNA downstream 59369 15742438 ~ 15742652 (+) True G111764
TU139965 lncRNA downstream 101450 15784519 ~ 15784762 (+) True G111786
TU139968 lncRNA downstream 166852 15849921 ~ 15869801 (+) True G111788
TU140129 lncRNA downstream 1031749 16714818 ~ 16722048 (+) True G111898
TU140142 lncRNA downstream 1096333 16779402 ~ 16804582 (+) False G111909
AMCG00006705 mRNA upstream 606805 15066888 ~ 15067622 (+) True AMCG00006705
AMCG00006703 mRNA upstream 637402 15006312 ~ 15037025 (+) True AMCG00006703
AMCG00006704 mRNA upstream 672145 14978693 ~ 15002282 (+) True AMCG00006704
AMCG00006699 mRNA upstream 710947 14948171 ~ 14963480 (+) True AMCG00006699
AMCG00006700 mRNA upstream 737175 14931023 ~ 14937252 (+) True AMCG00006700
AMCG00006708 mRNA downstream 30758 15713827 ~ 15718338 (+) True AMCG00006708
AMCG00006710 mRNA downstream 36984 15720053 ~ 15726140 (+) True AMCG00006710
AMCG00006713 mRNA downstream 84042 15767111 ~ 15798662 (+) True AMCG00006713
AMCG00006721 mRNA downstream 316327 15999396 ~ 16030884 (+) True AMCG00006721
AMCG00006724 mRNA downstream 652041 16335110 ~ 16345016 (+) True AMCG00006724
TU139270 other upstream 2630979 13011184 ~ 13043448 (+) True G111197
TU138516 other upstream 6107076 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 6950361 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 7497641 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 8019233 7653672 ~ 7655194 (+) True G110279
TU140941 other downstream 5254428 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 5365267 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 5459796 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 8349044 24032113 ~ 24036112 (+) False AMCG00006878
TU141783 other downstream 8621710 24304779 ~ 24335916 (+) False AMCG00006884

Expression Profile