RNA id: AMCG00006712


Basic Information

Item Value
RNA id AMCG00006712
length 546
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00006712
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15702374 ~ 15704607 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcTTGGGATGCGGATTTGGCAAAAATAGCTAGTAAATGGGTGAagcattgccattttaaatacaacCCTGACTTGATAAATTCTGGGAATGCCCACCCCACTTTTTCTACTGTTGGTGAGAACTTGTGGGTTGGAGGACCACCTCACAGCTTCAGTGTAGCCCGTGCAATAAAGTCATGGTATGATGAAGTTAAACACTATGATTACAGAACCAATGTTTGCACCAAGATATGCGGACACTATACTCAGGTTGTCTGGGCAAAGAGTTACAAGGTCGGCTGTGCAGTTCAAACCTGCCCCAATGGAATTACTGGCTTCTCAGATACTGCTtctgtaatgtttgtttgtaactATGGTCCTGCTGGGGTCTATGATGGAGAACAACCATACACAGAAGGAAGTAATGTAGTGATGCTGATGGATTCCACTGTTTATCTGCGGCCTTTGCCAGATATCAACGATCAAGGCTTCATCCATGATTATGTTGCTGTTCATAACAATTATCGATCCAAGGTGGAACCACGTGCAAGTGACATGATGGATATG

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko05310 Asthma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139912 lncRNA downstream 42962 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 144173 15557943 ~ 15558201 (-) True G111730
TU139901 lncRNA downstream 164538 15537476 ~ 15537836 (-) True G111728
TU139797 lncRNA downstream 907425 14794718 ~ 14794949 (-) True G111630
TU139793 lncRNA downstream 968203 14733170 ~ 14734171 (-) True G111626
TU139937 lncRNA upstream 24006 15728613 ~ 15729533 (-) True G111759
TU139944 lncRNA upstream 37839 15742446 ~ 15742715 (-) True G111765
TU140035 lncRNA upstream 176523 15881130 ~ 15896843 (-) False AMCG00006719
TU140185 lncRNA upstream 1158070 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 1193812 16898419 ~ 16901537 (-) True G111945
AMCG00006711 mRNA downstream 11327 15686692 ~ 15691047 (-) True AMCG00006711
AMCG00006707 mRNA downstream 71203 15627216 ~ 15631171 (-) True AMCG00006707
AMCG00006706 mRNA downstream 127619 15564599 ~ 15574755 (-) True AMCG00006706
AMCG00006702 mRNA downstream 775032 14905548 ~ 14927342 (-) True AMCG00006702
AMCG00006698 mRNA downstream 883858 14808861 ~ 14818516 (-) True AMCG00006698
AMCG00006718 mRNA upstream 30058 15734665 ~ 15735290 (-) True AMCG00006718
AMCG00006717 mRNA upstream 30691 15735298 ~ 15739448 (-) True AMCG00006717
AMCG00006715 mRNA upstream 51675 15756282 ~ 15765276 (-) True AMCG00006715
AMCG00006714 mRNA upstream 141624 15846231 ~ 15848777 (-) True AMCG00006714
AMCG00006716 mRNA upstream 145314 15849921 ~ 15869937 (-) True AMCG00006716
TU139783 other downstream 948404 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 948404 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1337952 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2199146 13455432 ~ 13503228 (-) True AMCG00006663
TU139244 other downstream 2823718 12876292 ~ 12878656 (-) True AMCG00006641
TU139946 other upstream 48214 15752821 ~ 15753235 (-) True G111767
TU140351 other upstream 1928284 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2634663 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3928630 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4531249 20235856 ~ 20236206 (-) True G112420

Expression Profile