RNA id: AMCG00006714


Basic Information

Item Value
RNA id AMCG00006714
length 2073
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00006714
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15846231 ~ 15848777 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGGGGCGGACCACAGGAGCGGCTCCAGGAAAATCCCCGTCACGCTGGATGAGAGGATCAGTCATATTCCTGCAACCGCCGCAGACGGGAGGAGCGGAGCGCGGCAGGGAGGTCGCTATACAGAGCAAGCCGCTGATGATCACATCCCCCGCTCGCCAGGACGGCTTTGCATCGACTTGAGGTCCGGGAAATAAGGCAACACCCGCCACTTTCGTGATGTTGGAGAGCAGCGGCAAGGTGCTGAAAGAGGGGCTGCTGGAGAAGAGAAGTGATGGTTTACTGCAGCTGTGGAAGAAGAAACACTGCGTCCTCACAGACGAGGGGCTCCTGCTTCAGCCCCCGAAACAGCACGACCACCCGcatcagcaccagcagcagcagcagcagcagcagcaccaccaccacccgGTGCCCCCGCCCGGCGAGCCCGGCAGAGTCAAAGCGCTGCCCTTCTCCAGCATGAAGACCGTGGATTGCGTGGAGAGGAAGGGCAAATACATGTACTTCACGGTGGTGATGACGGAGGGCAAGGAGGTGGATTTCAGGTGCCCGCAGGACGCGGGCTGGAACGCGCAGATCACGCTGCAGATGGTGCGGTACAAGAACAGACAGGCCATCCTGGCCGTGAAGTCCAGCCGGCAGAAGCAGCAGCTGCTGGTGGCGCCGCTGCCCGGACACACACTCATCAGGAAGTCGCCGCACTTAGCGTAACGCATGGGAAGGATCAATGGGATCAATGGGATCAATGCAGCCTGGTTTTACTGGTCGTCTGTTGGTGTGCTAACTAAAGACATGTCCAATCTCAGTGAATATTGCTGATCCTAAGGAAAACATCCATTTCCACCacgtttgtattttttgtagacTTGGCTATCAACGAAACCATGAAATGCTTTTCAGCATGGAAGGAAAAGTGACTCTATTCAATTCTACCGTTTTATATTGTCTTTcgtttgtatttattagttgtattttatttctctctgcttGACATTTATGAATGTGAGATCGCAACCTATGGAGCAAAGGATGATGTTTGAACTCGTCATTAATTCCACACCCATTTTCACTTTCGAAACACACGTACACAGAAGGTTGgttatttttctgtatgtacCAATGTGCTCATAAAACactttgaagatatcttgatcATCTGCACATCGGTCTTTACAAACCGGCAACGTTAGAAAGACGTAAGCCTATGAAATATTGCGAGTTGTAAAAGTGAAATGGAGGATTTCAAGTCTGCCTTGAAGTTATGTTATTGGACTTAAAAATGATTGGCTTATCATTGcacgttttgtgtgttatcaagGATTTTGATTTGAACAATTCAACAGCACTGCTAATATTTCAAGATCCATAAGGCACACCTACCTGTCCTGGCTGAAATTAAAATTTCTTCAACTAAATCACTTTCAACTAGTTGAATGGGGCGAATATTACCAAAGACCTAAATGCTctacatatgtttattttttacagttatgCATAGTTTAACCTTAAACTGAATATAACAATTCGAGTACTTCTGAAGTTACTGTAACTTACCCTGACAAACTGTTGGAAAACTATGCCAAAAACATTTCTAATGGATTTTAGTTGGCCGACTAGGTAGTTTTTAAtgagcagtttattttttgttgtacattttcttagcagtttgttttatttgcctaATGTGTTGCATTAGCCAGTCATATTGTAGATGTGCAAATCAAGGTCTCTGAGCATTAGCTGCTGTCACTCCAATGTGTAGGATGCCCATGCAATAGAGTGCTGTAATTTCATGTGTGGAGAATTGTCTGTGGAACCTGTTGtgacatatgtatattttattttcttgttaccCAAATGTTAATCAGCAGTATTCTGAGTTGTTTCTGAAGATGTGAGAAGTATTTTGTCATATTTctcaaaaaaatacattccataACAAAAGAACCGTGTTtagtctttttgttgttgtgcagaCTGACCCTTTGCACTGAGGGTGACAGTGtctaaactgaaaacaaaccaaaaccattAACTCTGATATTTTTACACAAGCTTCTAAGTGGTACA

Function

GO: NA

KEGG:

id description
K23793 PHLDA; pleckstrin homology-like domain family A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139944 lncRNA downstream 103516 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 116698 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 186819 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 288030 15557943 ~ 15558201 (-) True G111730
TU139901 lncRNA downstream 308395 15537476 ~ 15537836 (-) True G111728
TU140035 lncRNA upstream 32353 15881130 ~ 15896843 (-) False AMCG00006719
TU140185 lncRNA upstream 1013900 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 1049642 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 1049642 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA upstream 1049642 16898419 ~ 16899893 (-) False G111945
AMCG00006715 mRNA downstream 80955 15756282 ~ 15765276 (-) True AMCG00006715
AMCG00006717 mRNA downstream 106783 15735298 ~ 15739448 (-) True AMCG00006717
AMCG00006718 mRNA downstream 110941 15734665 ~ 15735290 (-) True AMCG00006718
AMCG00006712 mRNA downstream 141624 15702374 ~ 15704607 (-) True AMCG00006712
AMCG00006711 mRNA downstream 155184 15686692 ~ 15691047 (-) True AMCG00006711
AMCG00006716 mRNA upstream 1144 15849921 ~ 15869937 (-) True AMCG00006716
AMCG00006719 mRNA upstream 42476 15891253 ~ 15896869 (-) True AMCG00006719
AMCG00006720 mRNA upstream 50766 15899543 ~ 15928141 (-) True AMCG00006720
AMCG00006722 mRNA upstream 183642 16032419 ~ 16039388 (-) True AMCG00006722
AMCG00006723 mRNA upstream 202589 16051366 ~ 16061810 (-) True AMCG00006723
TU139946 other downstream 92996 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 1092261 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 1092261 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1481809 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2343003 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 1784114 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2490493 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3784460 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4387079 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 5005280 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile