RNA id: AMCG00006715


Basic Information

Item Value
RNA id AMCG00006715
length 3576
RNA type mRNA
GC content 0.43
exon number 19
gene id AMCG00006715
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15756282 ~ 15765276 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTAAATTGAgcataaaatcataataatctaGATTGCCTCctttaaacaaatctaaaccTAACATTTAGGGAAATATTGAAGAACATACGTACTTTTCAAAATACGTTTGTGAATCCCAGGaagatttttgtttgtcttcagaTCATTATAAACGGTGTTCACATTGGAAAGAAACATgtTTGTCTCCGCATTTGTAACGTTGCTAGTGATTTGCGGTCGATTTAGCCACACCACCTCTTTGGaaaactGTGGCACCTACTCATTCTGCTGGATGTTCAATTCTAATACCACATATGACGGCATTGATATCAATCTATGGCTAAATGGAGTTGAACTGATTTCAATTGGAATTAAAGGCAAAGTCATGTCTTTGAAACTCGTATCATCTAGTTTTcattcattaacatttcaaaatggaagggatgtatttaaatggagaaTTTCCACAAGTTCATGTTCATCCCCTGTTGTTGTGAGAAGTGATCATGAAGTCAAAGATCACCCCATTAACAGCACGCTGGAAGCTTTGAAATCTTTAAATTCTGGTCTAGTTTTTGCATGTGAAAACAGAACTCTTTACCTGCGCCAAGAGGCAGATCTCATCTTTGCAGTTGGTTACACTGAGCGCTTCCCCCTCACTGTCGAATCCAGGAGCATCTCCTCACTGCTCATCTCCTGGAACGGCCCTTATTCTCTGCCCGGAGATCAAGAGCACAAGGTCACTTTGTACGAGCCCGATGATGATTCTGTTAATCTGGTGACTGTGGATTCTGTTCTAACCTCATACTACAGATTTAATAACCTGGACTCCTGTAAGGATTATGTGGCCTGTGTGGAGATGGCGGATAATCCCtccattgtgtgtgtaaaagccCTCACAGATCCCGATGTACCCAGGGACTTCAGAGTCACCGCGTTAAACGGCAGCAGCATTGCAGTGTCCTGGGACTGCCCCCTGAATCAGGAGTACACCTTGTTCACGGTCTCGGTGCTTCACCTCAACTCCACTGGTCAGCTAATCTTGGAGGAGTCTTACAGGCACGAGCAGGATGAGTTGAAGTTCACAGTCCGCAACCTGCCTGTGTGCAGTAAAGTGCAACTCGCCCTGCAGACGGTGTGCGAGAGTGACGAAACACGGAGCAGTGAAAAGATCTTTATCGATGGCAATGCAGCAAATGTCGAGTTGAAAGATGTCCGTCAAGCAGCGGCCACAAATGTCAGCTACACCCTGACGTGGTTTGTGAGGAATGACTCCTCTATTTCTATGTTCAGAGTGTACAACGATGACGTTTTGCAGAATATCACCACCGATACCAATTACACAGTGACTGGACTGCAGCCGTGCCACCAGTATAACGCCAAAGTGGAGGCTGTGTGTGGAGAGGATGTTGTGATGAGTGTAATGTCCATCCAGGCCACAACGGGCCCTGGTACTGTATCGCAATTGCAAATCCAAATTCAGGACTCCAAGGTGTACTGGACCACCAAGTCTGGATCCACTGCAACCTTTGTCTACGAGCTGTATGATGAAAACTGGACAGTGGTTGAGGGTGGGAAGCTTAGCAGTCCTGTGCTGGAGATTTCCGATCTGAAACCCAGAACTCACTATCAGCTGGAGTTGACTGAGGAGTGTTTTGGTGAGCATGGCAGTTCTGTGTTTTTGGAGTTTGTTACAGAGGCCAGGCTCTCCCCAGCATATGACTTCCCTAACAAGACCCAAATGGACCCCCCTGGCAGCCTTGAGGGCAGCACTGTCCAGTCTTTGGCCCAGAATGTCACAGTCACACAAGCTCCCATGAGGACCATGATCAGGCCCTCTGAAGatacaaatatacaatttgcTCTTTCATACCTTTTTCTTATTGTGCCATGGGCATTGCCACCCTATCTCAAGAATTTGACCTCAAAAGCTCGAATTGAACTGAATCTTCttgtaaaaaacaaattGGAGGATATCTTCAAAGAATATCCAGGTCGAGTAAAAGCTGTACTGGTAGCATTTGAATCGGCTAAATACAAAACGAAGATAACTTTTAAAATCTATGACGTTTCCAAAAAAGAAATCGAAGTGCTGTTGTCTCCAGCACAACTAACCAATTATATTCAGTCCCACACCTACCCTAACCTCACATTTTCAAATGGTGGGATATCCTTGGATGACCAAGATGAATGTTCTTCCGTGGTCTTGAATGACTGCAGTAAAAATTCCTATTGCATTAATACTCTGGACTCCTACACCTGCGTGTGTCATGAAGGATACTACGATGTGAGCGATGCCATCAGCCCTCGGCGCTCTACGTGTGATGAGGATGGCATGTTTACTCAGTGCACGGTGGGCCAGATAAAAACTGGAATTTCCAAGCAGTTTTTAAGAAGCCGCTTTGGTGGGGAGGTGAACGTCGTTTTGAATGATGGAAGCTGTCGTGTTAAAGAAAGCGAGAAGTATTATTACTCCTCCATACTTAGTAATCATGTGAACGAAACCCACATTGTGTTTAAGAATGTTCTCCACGTCTCTGCTAGCACTGATAAAGTGATCACTCGGAGGGACCTTCAAGTGGTGTGGAAATGCATCTATTCCAGAGAGTACCTCAGCCAGGCAGACCTGGGGGAAGATCCCATGGAGCATCAGTCCCTGATACTGATCCAGCACAACAGCAGCCGGATTCTCGAATTGAGCATGACCCTTCACAACAACGACTCTTTCAAGTCCAGCTACTCAATCCCAATGCAGTTGAACATTGATGATCATCTCTTCTTTGAAGTCTCACTTCATGTTCTGGGCACCTTGGCATTTGACTTTGTGTTGGAAGTGGTCTCCTGTTGGGCAACAGAGACCTCCAACCCTGAGGGAAAGCCCAAAGCATTCTTCTTGAATGACAGCTGTGCTGTTGATGACACTTTTAGGTGGTACACTGCCAATGGATTGGAGCAGATAAGTAGATTTTCTGTGCAGATATTCTCCATCAACCCGCAGAAACCTATCCATGTACACTGCATGACAAAGATATGCACacagaaggaaaaggaaaactgttCAACGatgtgtTCAGCAAAGAGAactgaaaaaagaagaagagatcTAAATAGACAACTCACAGCAGTTCTTTCTGCTGGGCCCATCATTGCAAGTAATCATACCATGACATTTGAGGCAAAGCAATCCCACTGGGTTGAGCTCCAAAATTTGATGACCATTGCTGGTGGGACAACTGCCTTCCTGGTTTTAATCTTGCTtggaattattataataaagagCATTTTGAAACACACTTCAAAAAAGCAAGAAGAGATTcgatgagattttttttttccccctattaGTTTTTATAGATCTTAttaatgtgaatattttttcagaaagtcGAATGAATTCAACAATTTTGTGAAGGATAATGTATGATTTCAAGGAATGTGACATTAATTAACGTGCATTGTTAAAGTTGGTGTAATATCCTCCATTTGAAGATAACCTGCTACTTCTCTTCAATGTTGAGGATTTATACTGATGCATATGTTGGaagattttattgaaaatgttacaaataaagccacaaaattaatgtttacaGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139944 lncRNA downstream 13567 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 26749 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 96870 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 198081 15557943 ~ 15558201 (-) True G111730
TU139901 lncRNA downstream 218446 15537476 ~ 15537836 (-) True G111728
TU140035 lncRNA upstream 115854 15881130 ~ 15896843 (-) False AMCG00006719
TU140185 lncRNA upstream 1097401 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 1133143 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 1133143 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA upstream 1133143 16898419 ~ 16899893 (-) False G111945
AMCG00006717 mRNA downstream 16834 15735298 ~ 15739448 (-) True AMCG00006717
AMCG00006718 mRNA downstream 20992 15734665 ~ 15735290 (-) True AMCG00006718
AMCG00006712 mRNA downstream 51675 15702374 ~ 15704607 (-) True AMCG00006712
AMCG00006711 mRNA downstream 65235 15686692 ~ 15691047 (-) True AMCG00006711
AMCG00006707 mRNA downstream 125111 15627216 ~ 15631171 (-) True AMCG00006707
AMCG00006714 mRNA upstream 80955 15846231 ~ 15848777 (-) True AMCG00006714
AMCG00006716 mRNA upstream 84645 15849921 ~ 15869937 (-) True AMCG00006716
AMCG00006719 mRNA upstream 125977 15891253 ~ 15896869 (-) True AMCG00006719
AMCG00006720 mRNA upstream 134267 15899543 ~ 15928141 (-) True AMCG00006720
AMCG00006722 mRNA upstream 267143 16032419 ~ 16039388 (-) True AMCG00006722
TU139946 other downstream 3047 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 1002312 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 1002312 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1391860 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2253054 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 1867615 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2573994 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3867961 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4470580 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 5088781 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile