RNA id: AMCG00006716


Basic Information

Item Value
RNA id AMCG00006716
length 3484
RNA type mRNA
GC content 0.43
exon number 14
gene id AMCG00006716
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15849921 ~ 15869937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGGCGGCGAGCCCCTCCCCCAGCCGGCGCGTTGCCCGGGCGACGGCGCGGTTTTACGTGATGACGCGCGATGTATATGAGCGCGAGCGGCGGGATCTCTTTCCCTTTTACCGCCATCCGCGCGGAGCCTCCCCGAGCAGACGCACTCCGCCGGCCGCCAGCAGCAGCGAGCAAAGATCAGGCCGAACTGGATCCGGCAGACATGGAAGATGTGGAGGAggtggaagaagaagaaactggAGAAGATGTCAACAGCAAAGCTCGTCAGCTAACAGTCCAGATGATGCAAAACCCCCAGATCCTGGCTGCTTTGCAGGAGAGGCTGGACGGGCTAGTGGGATCACCGTCGGGCTACATGGAGAGTTTACCTAAGGTAGTCAAGAGACGTGTCAATGCCCTCAAGAACCTCCAAGTCAAGTGCGCCCAGATTGAAGCCAAGTTTTATGAAGAAGTACACGAGTTGGAAAGAAAGTATGCTGCTCTTTATCAGCCTCTCTTTGATAAGCGAAGTGAAATCATCAAAGCGGCCTACGAGCCAACCGACGAAGAGTGTGAATGGAAGGCAGATGAGGAGGAAGAACTGACAgaggaaatgaaagaaaaggcaaaagtagaagaggagaaaaaagatgaagaaaaagaagatcCCAAAGGAATCCCAGAGTTCTGGCTGACGGTCTTTAAGAATGTTGACTTGCTCAGTGACATGTTGCAGgagcATGATGAACCAATTCTTAAGCACTTACAAGACATCAAAGTTAAATTTTCAGATCCGGGACAGCCTATgAGTTTTACATTAgagttttattttgaatccaACGACTTCTTCACAAATGAAGTATTGACAAAAACCTACAAGATGAGGTCAGAGCCGGATGAAGCAGACCCCTTCTCCTTTGACGGGCCAGAAATCATGGGCTGCACAGGCTGTCAGATTGACTGGAAAAAGGGAAAGAATGTCACGTTAAAAACCATTaagaagaagcagaagcacAAGGGAAGGGGCACAGTCAGGACAGTGACTAAAACTGTGCCCAACGATTCATTCTTCAATTTCTTCACTCCTCCTGAAGttccaGAAAATGGAGAGCTGGATGAGGACTCGGAGGCCGTGCTGTCTGCAGACTTCGAGATCGGGCACTTCCTCCGGGAGCGCATCGTGCCCAGGGCGGTGCTGTACTTCACAGGCGAAGCGATAGAGGATGACGACGACGACtatgatgaagagggagaggaagcTGATGATGAGGAAGGGGAAGAGGAAGCGGATGAGGAGAACGATCCGGATTATGACCCGAAGAAGGACACAAATCCCCCAGCTGAGTGCAAGCAGCAATGAAACCTGCGTTGGTGGCCTTGAGGATTAACTGCACTGTAACAgcttattaaacaaaacatagtTACTTACAGCcttataatgttttgtattttcttggtagaaataaaattaattttttttgttacaaaatcatgaagggccaGTTCCAAGCCTCGGCTCATTCTGCATAGTATTTTACTAGAACTTTTCTCTGTACAAATAGTTAGAATGCAGTAAATCCCTCttaagaaaaaggagaaaagaaaaaaaaaaaaagcatgaacaTGTTTCTTCACTGCTAAATAGTTTGGGTTCTTGTGAAGTCTTTTGTTGTATTGCTCTTagacaacagctgtggaaagactgaattattttagagaccattgtttattccaacCTATTCCTTTCCCGACAAAGAACCAACCAAAGTAATCTTTCGGCCCAGTAGTCTCGGTGGGTTTGAGAAGTCCGTGCTTGCACTAGCTGTGCCTTCATTACATTGTTCTAGAAATGCAGTGCTGCAGTGACTTGTAATTTAGACTCAACTCGTTAAAAACATCCGTGGCTGGCTGTCAAAAGGGGAAGAAACCATGCCCAGCCATGGAAGAAACTCAATCAAACATGAGTTGTGTACTGTGCATATACTATATGCTTGttaatgctgttttttatgTGAAATGATCTCTCCCCCTTAAAGAACTGCATAGACACCACAAAGGTTATTGTATCACTTGGgtgtgaataaaaacaattagtATTTTCAGATGTTTGTTTCTCTTATGTCTTTTTATTTCAATCAATACATTCCAGTAAATTAAAATTGGAAAGGGATCTTTGAATCTTTAGGGAACCATATCATATTGAAGTAGTGCTGATTGGTCATTTTGTGTAAAGGGATTCTTGCTGTAAATGACAACGCTTGGTTTATACATGGGCACTGCAGTCTTGAGTAATGGTTATCATAAGACCTCCTGAACTGGAGATGGGAATGTGGAAAGCTTTATTGCTGTACATAGACATTGTTACTTCACTCCTGTGTCCCTCACTGTCTGAGGACAAGGGGCCGTGTGAGCCCTAAACATTCACTGGCTGTGTTGTTGTACATGTCCAACTTTTGAGTACAGATGTAGTGCTAGTGGTGTTTGATCAATTGTTTATAATGGCATTTGGTGAACCTCATGTTACTTTAGATGTCCCTAATACATGCTGTCCTGTACCATATGGTTACATTTCAGTAGTGGTTTGTCATTTTTGTCGCATTCGTAATACGCTTATTCTGTTTTCTGAGTAATCTGAGAATGAATGGGTGTTAGATCATCCCTTTTAAATCTAATCAAAGAGCACTTACTAGTGGAAGTAATTGACTTTTATTCAATGTATTGCACCCTAGGGCTTTGTACTAACTGTTAAACATTTCTCTGTAGCTATCCATTTAAGTAAATCATCCTTGCTTAAAACCTGGTTATTATACTAGTTGCATCTTGTGATCGATCTAATGGAAATGCTAAActacatatttgtgttttgtggaaGGAATGGGTTAGAATATTTTACCAAAACTAATTTAGTTTCTGGCTGGGCTTCAACTGGTTAATGTTGCACTTTTTGTGTTCTATCAAACGTGggcattttagtttatttgtggAACTGTCCTCTGATGGTTAACATGCAGACATGCTTAATTATAGCAGTGCTGcacttaaaagtaatttaaaataaatgttacatagTCTGGCCTCCGTTTGTTTAGCTGTTCACCAGGGATTAGGGTTTTTAAAAGCTGAACAGATGGAAGCCCACAGTATGTGGAAGGCTTCTCCTAGAATCTGTGTTCCTGGTTCCCCTGTCCAGGGAGGCCAGTGCTGTAGCACATGAGACTGAAATCTGATTTGCAGGGAAAAATGAGAGTCTCCCGGGGACTCGACATCAAAATTGCGTGTGCATTGCTATCCCCATCCTGACCTCGGTGGCTGTGCATGGTGAAGCCCTGGAAACATTACACGTTCAGTAGGAGATCAATACCTATCTGACTGTATCAAAAGTGGATTCTGTCTGGATCATTTATAGCAGCTGTTGTCAAAGCAAAATGCTATGCTACAAAATACTAATGTACTCGATAATTGTACGTGTATGTATATTCATGAATAAATTTGTTAAATGTGCA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11279 NAP1L1, NRP; nucleosome assembly protein 1-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139944 lncRNA downstream 107206 15742446 ~ 15742715 (-) True G111765
TU139937 lncRNA downstream 120388 15728613 ~ 15729533 (-) True G111759
TU139912 lncRNA downstream 190509 15657998 ~ 15659412 (-) True G111736
TU139903 lncRNA downstream 291720 15557943 ~ 15558201 (-) True G111730
TU139901 lncRNA downstream 312085 15537476 ~ 15537836 (-) True G111728
TU140035 lncRNA upstream 11193 15881130 ~ 15896843 (-) False AMCG00006719
TU140185 lncRNA upstream 992740 16862677 ~ 16862967 (-) True G111940
TU140191 lncRNA upstream 1028482 16898419 ~ 16901537 (-) True G111945
TU140192 lncRNA upstream 1028482 16898419 ~ 16901537 (-) False G111945
TU140193 lncRNA upstream 1028482 16898419 ~ 16899893 (-) False G111945
AMCG00006714 mRNA downstream 1144 15846231 ~ 15848777 (-) True AMCG00006714
AMCG00006715 mRNA downstream 84645 15756282 ~ 15765276 (-) True AMCG00006715
AMCG00006717 mRNA downstream 110473 15735298 ~ 15739448 (-) True AMCG00006717
AMCG00006718 mRNA downstream 114631 15734665 ~ 15735290 (-) True AMCG00006718
AMCG00006712 mRNA downstream 145314 15702374 ~ 15704607 (-) True AMCG00006712
AMCG00006719 mRNA upstream 21316 15891253 ~ 15896869 (-) True AMCG00006719
AMCG00006720 mRNA upstream 29606 15899543 ~ 15928141 (-) True AMCG00006720
AMCG00006722 mRNA upstream 162482 16032419 ~ 16039388 (-) True AMCG00006722
AMCG00006723 mRNA upstream 181429 16051366 ~ 16061810 (-) True AMCG00006723
AMCG00006734 mRNA upstream 846338 16716275 ~ 16783557 (-) True AMCG00006734
TU139946 other downstream 96686 15752821 ~ 15753235 (-) True G111767
TU139783 other downstream 1095951 14725651 ~ 14753970 (-) False G111621
TU139786 other downstream 1095951 14725651 ~ 14753970 (-) False G111621
TU139625 other downstream 1485499 14360228 ~ 14364422 (-) True G111489
TU139375 other downstream 2346693 13455432 ~ 13503228 (-) True AMCG00006663
TU140351 other upstream 1762954 17632891 ~ 17633445 (-) True G112059
TU140430 other upstream 2469333 18339270 ~ 18341210 (-) False AMCG00006754
TU140642 other upstream 3763300 19633237 ~ 19635925 (-) False AMCG00006774
TU140776 other upstream 4365919 20235856 ~ 20236206 (-) True G112420
TU140946 other upstream 4984120 20854057 ~ 20949836 (-) False AMCG00006813

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00057532 False 2242 lncRNA 0.44 3 NC_007115.7 2352780 ~ 2355189 (+)
grasscarp (Ctenopharyngodon idella) TU307657 True 3162 lncRNA 0.44 2 CI01000066 2388795 ~ 2393844 (+)